Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7033 and GFF7034 overlap by 4 nucleotides GFF7034 and GFF7035 are separated by 143 nucleotides GFF7035 and GFF7036 are separated by 9 nucleotides
GFF7033 - protein of unknown function DUF427, at 207 to 491
GFF7033
GFF7034 - FIG00538743: hypothetical protein, at 488 to 1,243
GFF7034
GFF7035 - UspA, at 1,387 to 1,827
GFF7035
GFF7036 - LSU rRNA pseudouridine(746) synthase (EC 5.4.99.29) @ tRNA pseudouridine(32) synthase (EC 5.4.99.28), at 1,837 to 2,508
GFF7036
Position (kb) 0
1
2 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 0.098 kb on - strand at 0.098 kb on - strand at 0.102 kb on - strand at 0.102 kb on - strand at 0.102 kb on - strand at 0.143 kb on - strand at 0.276 kb on + strand, within GFF7033 at 0.276 kb on + strand, within GFF7033 at 0.360 kb on + strand, within GFF7033 at 0.360 kb on + strand, within GFF7033 at 0.360 kb on + strand, within GFF7033 at 0.360 kb on + strand, within GFF7033 at 0.361 kb on - strand, within GFF7033 at 0.363 kb on + strand, within GFF7033 at 0.363 kb on + strand, within GFF7033 at 0.363 kb on + strand, within GFF7033 at 0.363 kb on + strand, within GFF7033 at 0.363 kb on + strand, within GFF7033 at 0.364 kb on - strand, within GFF7033 at 0.364 kb on - strand, within GFF7033 at 0.364 kb on - strand, within GFF7033 at 0.408 kb on + strand, within GFF7033 at 0.408 kb on + strand, within GFF7033 at 0.409 kb on - strand, within GFF7033 at 0.409 kb on - strand, within GFF7033 at 0.411 kb on + strand, within GFF7033 at 0.411 kb on + strand, within GFF7033 at 0.411 kb on + strand, within GFF7033 at 0.411 kb on + strand, within GFF7033 at 0.411 kb on + strand, within GFF7033 at 0.411 kb on + strand, within GFF7033 at 0.411 kb on + strand, within GFF7033 at 0.411 kb on + strand, within GFF7033 at 0.412 kb on - strand, within GFF7033 at 0.412 kb on - strand, within GFF7033 at 0.412 kb on - strand, within GFF7033 at 0.412 kb on - strand, within GFF7033 at 0.412 kb on - strand, within GFF7033 at 0.412 kb on - strand, within GFF7033 at 0.560 kb on + strand at 0.560 kb on + strand at 0.561 kb on - strand at 0.561 kb on - strand at 0.561 kb on - strand at 0.779 kb on + strand, within GFF7034 at 0.779 kb on + strand, within GFF7034 at 0.779 kb on + strand, within GFF7034 at 0.780 kb on - strand, within GFF7034 at 0.780 kb on - strand, within GFF7034 at 0.780 kb on - strand, within GFF7034 at 0.780 kb on - strand, within GFF7034 at 0.917 kb on + strand, within GFF7034 at 0.917 kb on + strand, within GFF7034 at 0.917 kb on + strand, within GFF7034 at 0.918 kb on - strand, within GFF7034 at 0.918 kb on - strand, within GFF7034 at 1.297 kb on + strand at 1.297 kb on + strand at 1.297 kb on + strand at 1.297 kb on + strand at 1.297 kb on + strand at 1.297 kb on + strand at 1.297 kb on + strand at 1.297 kb on + strand at 1.297 kb on + strand at 1.297 kb on + strand at 1.298 kb on - strand at 1.510 kb on + strand, within GFF7035 at 1.510 kb on + strand, within GFF7035 at 1.510 kb on + strand, within GFF7035 at 1.510 kb on + strand, within GFF7035 at 1.510 kb on + strand, within GFF7035 at 1.511 kb on - strand, within GFF7035 at 1.511 kb on - strand, within GFF7035 at 1.511 kb on - strand, within GFF7035 at 1.511 kb on - strand, within GFF7035 at 1.511 kb on - strand, within GFF7035 at 1.511 kb on - strand, within GFF7035 at 1.511 kb on - strand, within GFF7035 at 1.537 kb on + strand, within GFF7035 at 1.538 kb on - strand, within GFF7035 at 1.538 kb on - strand, within GFF7035 at 1.558 kb on + strand, within GFF7035 at 1.559 kb on - strand, within GFF7035 at 1.559 kb on - strand, within GFF7035 at 1.559 kb on - strand, within GFF7035 at 1.866 kb on + strand at 1.867 kb on - strand at 1.867 kb on - strand at 1.970 kb on + strand, within GFF7036 at 1.970 kb on + strand, within GFF7036 at 1.970 kb on + strand, within GFF7036
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 98 - -0.7 98 - -2.7 102 - +0.8 102 - +0.1 102 - +0.4 143 - +3.1 276 + GFF7033 0.24 -0.8 276 + GFF7033 0.24 -0.1 360 + GFF7033 0.54 +0.4 360 + GFF7033 0.54 -0.8 360 + GFF7033 0.54 -0.9 360 + GFF7033 0.54 +1.8 361 - GFF7033 0.54 +2.1 363 + GFF7033 0.55 +0.3 363 + GFF7033 0.55 -0.0 363 + GFF7033 0.55 +1.0 363 + GFF7033 0.55 -0.3 363 + GFF7033 0.55 -1.2 364 - GFF7033 0.55 +1.0 364 - GFF7033 0.55 -1.0 364 - GFF7033 0.55 +0.8 408 + GFF7033 0.71 +0.5 408 + GFF7033 0.71 -0.3 409 - GFF7033 0.71 -0.4 409 - GFF7033 0.71 -0.3 411 + GFF7033 0.72 -1.2 411 + GFF7033 0.72 -1.2 411 + GFF7033 0.72 +0.1 411 + GFF7033 0.72 +0.1 411 + GFF7033 0.72 -2.6 411 + GFF7033 0.72 -0.8 411 + GFF7033 0.72 -0.7 411 + GFF7033 0.72 +0.5 412 - GFF7033 0.72 -0.2 412 - GFF7033 0.72 -0.3 412 - GFF7033 0.72 -0.5 412 - GFF7033 0.72 +1.3 412 - GFF7033 0.72 +0.4 412 - GFF7033 0.72 -1.2 560 + -1.2 560 + -2.6 561 - -1.8 561 - -1.3 561 - -2.5 779 + GFF7034 0.38 -0.2 779 + GFF7034 0.38 -2.6 779 + GFF7034 0.38 -0.8 780 - GFF7034 0.39 -2.2 780 - GFF7034 0.39 -2.4 780 - GFF7034 0.39 -1.5 780 - GFF7034 0.39 -0.9 917 + GFF7034 0.57 -1.9 917 + GFF7034 0.57 -0.0 917 + GFF7034 0.57 +1.0 918 - GFF7034 0.57 +0.4 918 - GFF7034 0.57 -2.6 1,297 + -0.0 1,297 + -1.0 1,297 + -1.7 1,297 + -2.7 1,297 + -1.3 1,297 + -0.4 1,297 + +0.2 1,297 + +1.0 1,297 + -1.4 1,297 + +2.0 1,298 - +0.3 1,510 + GFF7035 0.28 -3.6 1,510 + GFF7035 0.28 -2.3 1,510 + GFF7035 0.28 -0.6 1,510 + GFF7035 0.28 -2.1 1,510 + GFF7035 0.28 -1.6 1,511 - GFF7035 0.28 -0.3 1,511 - GFF7035 0.28 -1.2 1,511 - GFF7035 0.28 -0.2 1,511 - GFF7035 0.28 -2.6 1,511 - GFF7035 0.28 -0.8 1,511 - GFF7035 0.28 +1.0 1,511 - GFF7035 0.28 -0.7 1,537 + GFF7035 0.34 -1.2 1,538 - GFF7035 0.34 -0.3 1,538 - GFF7035 0.34 -4.3 1,558 + GFF7035 0.39 -1.6 1,559 - GFF7035 0.39 -2.4 1,559 - GFF7035 0.39 -2.3 1,559 - GFF7035 0.39 -1.2 1,866 + -3.3 1,867 - -2.0 1,867 - -2.0 1,970 + GFF7036 0.20 +0.2 1,970 + GFF7036 0.20 -0.8 1,970 + GFF7036 0.20 -2.9
Or see this region's nucleotide sequence