Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7005 and GFF7006 overlap by 1 nucleotides GFF7006 and GFF7007 are separated by 101 nucleotides GFF7007 and GFF7008 are separated by 114 nucleotides
GFF7005 - Flagellar biosynthesis protein FlhB, at 21,691 to 22,785
GFF7005
GFF7006 - Flagellar biosynthesis protein FliR, at 22,785 to 23,501
GFF7006
GFF7007 - Flagellar biosynthesis protein FliQ, at 23,603 to 23,869
GFF7007
GFF7008 - no description, at 23,984 to 24,133
GFF7008
Position (kb) 22
23
24 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 21.950 kb on + strand, within GFF7005 at 22.072 kb on - strand, within GFF7005 at 22.158 kb on - strand, within GFF7005 at 22.158 kb on - strand, within GFF7005 at 22.244 kb on + strand, within GFF7005 at 22.274 kb on + strand, within GFF7005 at 22.275 kb on - strand, within GFF7005 at 22.275 kb on - strand, within GFF7005 at 22.275 kb on - strand, within GFF7005 at 22.597 kb on + strand, within GFF7005 at 22.849 kb on + strand at 23.126 kb on - strand, within GFF7006 at 23.126 kb on - strand, within GFF7006 at 23.126 kb on - strand, within GFF7006 at 23.188 kb on + strand, within GFF7006 at 23.188 kb on + strand, within GFF7006 at 23.189 kb on - strand, within GFF7006 at 23.204 kb on + strand, within GFF7006 at 23.205 kb on - strand, within GFF7006 at 23.205 kb on - strand, within GFF7006 at 23.316 kb on + strand, within GFF7006 at 23.316 kb on + strand, within GFF7006 at 23.317 kb on - strand, within GFF7006 at 23.317 kb on - strand, within GFF7006 at 23.482 kb on + strand at 23.483 kb on - strand at 23.541 kb on + strand at 23.541 kb on + strand at 23.542 kb on - strand at 23.542 kb on - strand at 23.542 kb on - strand at 23.542 kb on - strand at 23.870 kb on + strand at 23.871 kb on - strand at 23.909 kb on + strand at 23.940 kb on + strand at 23.941 kb on - strand at 23.941 kb on - strand at 24.048 kb on + strand, within GFF7008 at 24.073 kb on - strand, within GFF7008 at 24.169 kb on + strand at 24.182 kb on - strand at 24.251 kb on - strand at 24.265 kb on + strand at 24.265 kb on + strand at 24.265 kb on + strand at 24.266 kb on - strand at 24.266 kb on - strand at 24.350 kb on + strand at 24.351 kb on - strand at 24.383 kb on + strand at 24.383 kb on + strand at 24.383 kb on + strand at 24.383 kb on + strand at 24.383 kb on + strand at 24.384 kb on - strand at 24.384 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 21,950 + GFF7005 0.24 +0.7 22,072 - GFF7005 0.35 +0.4 22,158 - GFF7005 0.43 -1.4 22,158 - GFF7005 0.43 +0.3 22,244 + GFF7005 0.51 -2.8 22,274 + GFF7005 0.53 +2.7 22,275 - GFF7005 0.53 -1.1 22,275 - GFF7005 0.53 -0.1 22,275 - GFF7005 0.53 -1.5 22,597 + GFF7005 0.83 -0.0 22,849 + -0.1 23,126 - GFF7006 0.48 -0.0 23,126 - GFF7006 0.48 -0.3 23,126 - GFF7006 0.48 -1.2 23,188 + GFF7006 0.56 -2.1 23,188 + GFF7006 0.56 -0.7 23,189 - GFF7006 0.56 -0.4 23,204 + GFF7006 0.58 +1.2 23,205 - GFF7006 0.59 +1.2 23,205 - GFF7006 0.59 -0.8 23,316 + GFF7006 0.74 -0.6 23,316 + GFF7006 0.74 -0.6 23,317 - GFF7006 0.74 -0.1 23,317 - GFF7006 0.74 +0.6 23,482 + +1.2 23,483 - -2.4 23,541 + +0.6 23,541 + +0.6 23,542 - +0.2 23,542 - +0.0 23,542 - -1.2 23,542 - +0.3 23,870 + +0.5 23,871 - -0.2 23,909 + -0.8 23,940 + +0.6 23,941 - -0.4 23,941 - +1.2 24,048 + GFF7008 0.43 -2.0 24,073 - GFF7008 0.59 +0.3 24,169 + -1.3 24,182 - -3.8 24,251 - +0.2 24,265 + +1.1 24,265 + +0.9 24,265 + -0.1 24,266 - -1.2 24,266 - -2.2 24,350 + -0.5 24,351 - -1.0 24,383 + +2.2 24,383 + -0.6 24,383 + +1.2 24,383 + -0.8 24,383 + +0.3 24,384 - +0.0 24,384 - -1.7
Or see this region's nucleotide sequence