Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6957 and GFF6958 overlap by 4 nucleotides GFF6958 and GFF6959 overlap by 4 nucleotides GFF6959 and GFF6960 are separated by 34 nucleotides
GFF6957 - Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22), at 31,823 to 33,229
GFF6957
GFF6958 - no description, at 33,226 to 33,492
GFF6958
GFF6959 - Putative analog of CcoH, COG3198, at 33,489 to 33,770
GFF6959
GFF6960 - Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in Cu oxidation, at 33,805 to 35,232
GFF6960
Position (kb) 33
34 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 32.341 kb on - strand, within GFF6957 at 32.346 kb on + strand, within GFF6957 at 32.347 kb on - strand, within GFF6957 at 32.466 kb on + strand, within GFF6957 at 32.466 kb on + strand, within GFF6957 at 32.467 kb on - strand, within GFF6957 at 32.473 kb on - strand, within GFF6957 at 32.556 kb on + strand, within GFF6957 at 32.557 kb on - strand, within GFF6957 at 32.931 kb on + strand, within GFF6957 at 32.931 kb on + strand, within GFF6957 at 32.931 kb on + strand, within GFF6957 at 32.991 kb on + strand, within GFF6957 at 32.991 kb on + strand, within GFF6957 at 32.991 kb on + strand, within GFF6957 at 32.991 kb on + strand, within GFF6957 at 32.994 kb on + strand, within GFF6957 at 33.027 kb on + strand, within GFF6957 at 33.027 kb on + strand, within GFF6957 at 33.028 kb on - strand, within GFF6957 at 33.028 kb on - strand, within GFF6957 at 33.028 kb on - strand, within GFF6957 at 33.132 kb on + strand at 33.132 kb on + strand at 33.141 kb on + strand at 33.347 kb on + strand, within GFF6958 at 33.347 kb on + strand, within GFF6958 at 33.347 kb on + strand, within GFF6958 at 33.347 kb on + strand, within GFF6958 at 33.348 kb on - strand, within GFF6958 at 33.348 kb on - strand, within GFF6958 at 33.348 kb on - strand, within GFF6958 at 33.619 kb on + strand, within GFF6959 at 33.620 kb on - strand, within GFF6959 at 34.017 kb on - strand, within GFF6960 at 34.017 kb on - strand, within GFF6960 at 34.059 kb on - strand, within GFF6960 at 34.296 kb on - strand, within GFF6960 at 34.359 kb on - strand, within GFF6960
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 32,341 - GFF6957 0.37 -1.8 32,346 + GFF6957 0.37 -0.1 32,347 - GFF6957 0.37 +0.3 32,466 + GFF6957 0.46 +0.9 32,466 + GFF6957 0.46 -0.6 32,467 - GFF6957 0.46 -0.6 32,473 - GFF6957 0.46 +0.6 32,556 + GFF6957 0.52 +0.3 32,557 - GFF6957 0.52 -2.6 32,931 + GFF6957 0.79 +0.7 32,931 + GFF6957 0.79 +1.3 32,931 + GFF6957 0.79 -1.4 32,991 + GFF6957 0.83 +2.1 32,991 + GFF6957 0.83 -1.0 32,991 + GFF6957 0.83 -1.8 32,991 + GFF6957 0.83 +2.4 32,994 + GFF6957 0.83 +2.0 33,027 + GFF6957 0.86 -0.4 33,027 + GFF6957 0.86 +0.2 33,028 - GFF6957 0.86 +0.1 33,028 - GFF6957 0.86 -1.0 33,028 - GFF6957 0.86 +0.5 33,132 + +1.6 33,132 + +1.0 33,141 + +0.2 33,347 + GFF6958 0.45 +0.5 33,347 + GFF6958 0.45 -1.6 33,347 + GFF6958 0.45 -0.9 33,347 + GFF6958 0.45 +0.7 33,348 - GFF6958 0.46 -2.1 33,348 - GFF6958 0.46 +0.1 33,348 - GFF6958 0.46 -1.5 33,619 + GFF6959 0.46 -0.9 33,620 - GFF6959 0.46 -1.1 34,017 - GFF6960 0.15 -0.1 34,017 - GFF6960 0.15 +1.2 34,059 - GFF6960 0.18 +0.3 34,296 - GFF6960 0.34 -1.6 34,359 - GFF6960 0.39 +2.8
Or see this region's nucleotide sequence