Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6906 and GFF6907 are separated by 44 nucleotides GFF6907 and GFF6908 overlap by 9 nucleotides GFF6908 and GFF6909 overlap by 4 nucleotides
GFF6906 - Transcriptional regulator, MarR family, at 41,789 to 42,214
GFF6906
GFF6907 - Acetyltransferase, GNAT family, at 42,259 to 42,867
GFF6907
GFF6908 - putative membrane protein, at 42,859 to 43,572
GFF6908
GFF6909 - Amidohydrolase, at 43,569 to 44,996
GFF6909
Position (kb) 42
43
44 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 42.084 kb on + strand, within GFF6906 at 42.084 kb on + strand, within GFF6906 at 42.084 kb on + strand, within GFF6906 at 42.085 kb on - strand, within GFF6906 at 42.085 kb on - strand, within GFF6906 at 42.262 kb on + strand at 42.262 kb on + strand at 42.262 kb on + strand at 42.263 kb on - strand at 42.263 kb on - strand at 42.263 kb on - strand at 42.264 kb on + strand at 42.264 kb on + strand at 42.398 kb on - strand, within GFF6907 at 43.124 kb on + strand, within GFF6908 at 43.124 kb on + strand, within GFF6908 at 43.125 kb on - strand, within GFF6908 at 43.403 kb on + strand, within GFF6908 at 43.403 kb on + strand, within GFF6908 at 43.403 kb on + strand, within GFF6908 at 43.403 kb on + strand, within GFF6908 at 43.403 kb on + strand, within GFF6908 at 43.403 kb on + strand, within GFF6908 at 43.403 kb on + strand, within GFF6908 at 43.403 kb on + strand, within GFF6908 at 43.404 kb on - strand, within GFF6908 at 43.404 kb on - strand, within GFF6908 at 43.404 kb on - strand, within GFF6908 at 43.404 kb on - strand, within GFF6908 at 43.404 kb on - strand, within GFF6908 at 43.404 kb on - strand, within GFF6908 at 43.404 kb on - strand, within GFF6908 at 43.404 kb on - strand, within GFF6908 at 43.404 kb on - strand, within GFF6908 at 43.861 kb on + strand, within GFF6909 at 44.143 kb on + strand, within GFF6909 at 44.143 kb on + strand, within GFF6909 at 44.143 kb on + strand, within GFF6909 at 44.143 kb on + strand, within GFF6909 at 44.143 kb on + strand, within GFF6909 at 44.144 kb on - strand, within GFF6909 at 44.144 kb on - strand, within GFF6909 at 44.144 kb on - strand, within GFF6909 at 44.144 kb on - strand, within GFF6909 at 44.144 kb on - strand, within GFF6909 at 44.144 kb on - strand, within GFF6909 at 44.144 kb on - strand, within GFF6909 at 44.144 kb on - strand, within GFF6909 at 44.144 kb on - strand, within GFF6909 at 44.144 kb on - strand, within GFF6909
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 42,084 + GFF6906 0.69 -0.6 42,084 + GFF6906 0.69 -2.2 42,084 + GFF6906 0.69 -0.4 42,085 - GFF6906 0.69 -1.6 42,085 - GFF6906 0.69 +2.4 42,262 + -0.4 42,262 + -0.2 42,262 + -0.5 42,263 - -0.2 42,263 - +0.7 42,263 - -0.2 42,264 + -1.0 42,264 + -2.3 42,398 - GFF6907 0.23 -0.4 43,124 + GFF6908 0.37 +2.2 43,124 + GFF6908 0.37 +1.3 43,125 - GFF6908 0.37 +0.5 43,403 + GFF6908 0.76 -1.5 43,403 + GFF6908 0.76 +1.4 43,403 + GFF6908 0.76 -0.1 43,403 + GFF6908 0.76 +1.3 43,403 + GFF6908 0.76 -0.4 43,403 + GFF6908 0.76 -3.0 43,403 + GFF6908 0.76 -1.3 43,403 + GFF6908 0.76 -1.5 43,404 - GFF6908 0.76 -0.6 43,404 - GFF6908 0.76 +2.1 43,404 - GFF6908 0.76 -0.9 43,404 - GFF6908 0.76 -0.4 43,404 - GFF6908 0.76 -0.3 43,404 - GFF6908 0.76 -1.3 43,404 - GFF6908 0.76 +1.1 43,404 - GFF6908 0.76 -2.3 43,404 - GFF6908 0.76 -0.8 43,861 + GFF6909 0.20 +0.4 44,143 + GFF6909 0.40 +0.7 44,143 + GFF6909 0.40 +0.8 44,143 + GFF6909 0.40 -2.4 44,143 + GFF6909 0.40 -0.2 44,143 + GFF6909 0.40 +1.1 44,144 - GFF6909 0.40 +1.4 44,144 - GFF6909 0.40 -1.9 44,144 - GFF6909 0.40 +0.2 44,144 - GFF6909 0.40 -0.1 44,144 - GFF6909 0.40 +0.6 44,144 - GFF6909 0.40 +0.4 44,144 - GFF6909 0.40 -2.0 44,144 - GFF6909 0.40 -0.3 44,144 - GFF6909 0.40 -2.0 44,144 - GFF6909 0.40 +1.8
Or see this region's nucleotide sequence