Strain Fitness in Variovorax sp. SCN45 around GFF6895

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6893 and GFF6894 are separated by 15 nucleotidesGFF6894 and GFF6895 are separated by 5 nucleotidesGFF6895 and GFF6896 are separated by 21 nucleotides GFF6893 - Phenazine biosynthesis protein PhzF like, at 26,083 to 27,015 GFF6893 GFF6894 - FIG00454405: hypothetical protein, at 27,031 to 27,723 GFF6894 GFF6895 - L-lysine permease, at 27,729 to 28,361 GFF6895 GFF6896 - pyridoxal-phosphate dependent enzyme family protein, at 28,383 to 29,354 GFF6896 Position (kb) 27 28 29Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 26.752 kb on + strand, within GFF6893at 26.752 kb on + strand, within GFF6893at 26.753 kb on - strand, within GFF6893at 26.753 kb on - strand, within GFF6893at 26.753 kb on - strand, within GFF6893at 26.890 kb on + strand, within GFF6893at 26.891 kb on - strand, within GFF6893at 26.891 kb on - strand, within GFF6893at 26.935 kb on + strandat 26.935 kb on + strandat 26.935 kb on + strandat 26.935 kb on + strandat 26.936 kb on - strandat 26.936 kb on - strandat 26.936 kb on - strandat 26.936 kb on - strandat 26.936 kb on - strandat 26.936 kb on - strandat 26.936 kb on - strandat 26.936 kb on - strandat 26.936 kb on - strandat 27.013 kb on + strandat 27.013 kb on + strandat 27.013 kb on + strandat 27.013 kb on + strandat 27.013 kb on + strandat 27.013 kb on + strandat 27.014 kb on - strandat 27.014 kb on - strandat 27.014 kb on - strandat 27.199 kb on + strand, within GFF6894at 27.200 kb on - strand, within GFF6894at 27.200 kb on - strand, within GFF6894at 27.200 kb on - strand, within GFF6894at 27.200 kb on - strand, within GFF6894at 27.390 kb on + strand, within GFF6894at 27.390 kb on + strand, within GFF6894at 27.390 kb on + strand, within GFF6894at 27.390 kb on + strand, within GFF6894at 27.390 kb on + strand, within GFF6894at 27.391 kb on - strand, within GFF6894at 27.391 kb on - strand, within GFF6894at 27.487 kb on + strand, within GFF6894at 27.487 kb on + strand, within GFF6894at 27.488 kb on - strand, within GFF6894at 27.488 kb on - strand, within GFF6894at 27.488 kb on - strand, within GFF6894at 27.488 kb on - strand, within GFF6894at 27.807 kb on + strand, within GFF6895at 27.807 kb on + strand, within GFF6895at 27.807 kb on + strand, within GFF6895at 27.807 kb on + strand, within GFF6895at 27.807 kb on + strand, within GFF6895at 27.807 kb on + strand, within GFF6895at 27.807 kb on + strand, within GFF6895at 27.807 kb on + strand, within GFF6895at 27.807 kb on + strand, within GFF6895at 27.807 kb on + strand, within GFF6895at 27.807 kb on + strand, within GFF6895at 27.807 kb on + strand, within GFF6895at 27.807 kb on + strand, within GFF6895at 27.807 kb on + strand, within GFF6895at 27.807 kb on + strand, within GFF6895at 27.807 kb on + strand, within GFF6895at 27.807 kb on + strand, within GFF6895at 27.808 kb on - strand, within GFF6895at 27.808 kb on - strand, within GFF6895at 27.808 kb on - strand, within GFF6895at 27.808 kb on - strand, within GFF6895at 27.808 kb on - strand, within GFF6895at 27.808 kb on - strand, within GFF6895at 27.808 kb on - strand, within GFF6895at 27.808 kb on - strand, within GFF6895at 27.808 kb on - strand, within GFF6895at 27.808 kb on - strand, within GFF6895at 27.808 kb on - strand, within GFF6895at 27.808 kb on - strand, within GFF6895at 27.808 kb on - strand, within GFF6895at 27.808 kb on - strand, within GFF6895at 27.808 kb on - strand, within GFF6895at 27.808 kb on - strand, within GFF6895at 27.975 kb on + strand, within GFF6895at 27.975 kb on + strand, within GFF6895at 27.975 kb on + strand, within GFF6895at 27.975 kb on + strand, within GFF6895at 27.976 kb on - strand, within GFF6895at 27.976 kb on - strand, within GFF6895at 28.119 kb on + strand, within GFF6895at 28.119 kb on + strand, within GFF6895at 28.119 kb on + strand, within GFF6895at 28.119 kb on + strand, within GFF6895at 28.119 kb on + strand, within GFF6895at 28.119 kb on + strand, within GFF6895at 28.119 kb on + strand, within GFF6895at 28.119 kb on + strand, within GFF6895at 28.119 kb on + strand, within GFF6895at 28.119 kb on + strand, within GFF6895at 28.120 kb on - strand, within GFF6895at 28.120 kb on - strand, within GFF6895at 28.120 kb on - strand, within GFF6895at 28.120 kb on - strand, within GFF6895at 28.120 kb on - strand, within GFF6895at 28.120 kb on - strand, within GFF6895at 28.299 kb on + strandat 28.299 kb on + strandat 28.299 kb on + strandat 28.299 kb on + strandat 28.300 kb on - strandat 28.359 kb on + strandat 28.359 kb on + strandat 28.359 kb on + strandat 28.359 kb on + strandat 28.359 kb on + strandat 28.359 kb on + strandat 28.359 kb on + strandat 28.360 kb on - strandat 28.360 kb on - strandat 28.360 kb on - strandat 28.360 kb on - strandat 28.360 kb on - strandat 28.360 kb on - strandat 28.360 kb on - strandat 28.360 kb on - strandat 28.360 kb on - strandat 28.360 kb on - strandat 28.360 kb on - strandat 28.360 kb on - strandat 28.360 kb on - strandat 28.360 kb on - strandat 28.455 kb on + strandat 28.455 kb on + strandat 28.455 kb on + strandat 28.455 kb on + strandat 28.456 kb on - strandat 28.456 kb on - strandat 28.456 kb on - strandat 28.456 kb on - strandat 28.456 kb on - strandat 28.557 kb on + strand, within GFF6896at 28.558 kb on + strand, within GFF6896at 28.558 kb on - strand, within GFF6896at 28.860 kb on + strand, within GFF6896at 28.860 kb on + strand, within GFF6896at 28.860 kb on + strand, within GFF6896at 28.860 kb on + strand, within GFF6896at 28.860 kb on + strand, within GFF6896at 28.861 kb on - strand, within GFF6896at 28.861 kb on - strand, within GFF6896at 28.861 kb on - strand, within GFF6896at 28.861 kb on - strand, within GFF6896at 28.861 kb on - strand, within GFF6896at 28.861 kb on - strand, within GFF6896

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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26,752 + GFF6893 0.72 -1.8
26,752 + GFF6893 0.72 -3.0
26,753 - GFF6893 0.72 +0.9
26,753 - GFF6893 0.72 -0.4
26,753 - GFF6893 0.72 -0.6
26,890 + GFF6893 0.86 +0.4
26,891 - GFF6893 0.87 +1.3
26,891 - GFF6893 0.87 -1.1
26,935 + -2.0
26,935 + -1.0
26,935 + -1.0
26,935 + -0.2
26,936 - -1.4
26,936 - -1.8
26,936 - +0.2
26,936 - -0.7
26,936 - -0.2
26,936 - -0.9
26,936 - -0.6
26,936 - +0.4
26,936 - -2.1
27,013 + +0.0
27,013 + +1.4
27,013 + -2.0
27,013 + +0.0
27,013 + -2.0
27,013 + -2.0
27,014 - +0.6
27,014 - +1.2
27,014 - -2.8
27,199 + GFF6894 0.24 +0.1
27,200 - GFF6894 0.24 +1.6
27,200 - GFF6894 0.24 -2.0
27,200 - GFF6894 0.24 +1.3
27,200 - GFF6894 0.24 -1.5
27,390 + GFF6894 0.52 +0.5
27,390 + GFF6894 0.52 -0.1
27,390 + GFF6894 0.52 +1.6
27,390 + GFF6894 0.52 -1.2
27,390 + GFF6894 0.52 -1.5
27,391 - GFF6894 0.52 +0.7
27,391 - GFF6894 0.52 -3.1
27,487 + GFF6894 0.66 -0.4
27,487 + GFF6894 0.66 -0.5
27,488 - GFF6894 0.66 -1.0
27,488 - GFF6894 0.66 +0.3
27,488 - GFF6894 0.66 -1.2
27,488 - GFF6894 0.66 +1.0
27,807 + GFF6895 0.12 +0.8
27,807 + GFF6895 0.12 -1.1
27,807 + GFF6895 0.12 -1.0
27,807 + GFF6895 0.12 +0.3
27,807 + GFF6895 0.12 -3.7
27,807 + GFF6895 0.12 -1.0
27,807 + GFF6895 0.12 -1.0
27,807 + GFF6895 0.12 +1.8
27,807 + GFF6895 0.12 +0.2
27,807 + GFF6895 0.12 -0.8
27,807 + GFF6895 0.12 -2.9
27,807 + GFF6895 0.12 -2.6
27,807 + GFF6895 0.12 -0.4
27,807 + GFF6895 0.12 +1.3
27,807 + GFF6895 0.12 -0.4
27,807 + GFF6895 0.12 -1.0
27,807 + GFF6895 0.12 +0.4
27,808 - GFF6895 0.12 +0.2
27,808 - GFF6895 0.12 +0.5
27,808 - GFF6895 0.12 -2.4
27,808 - GFF6895 0.12 -2.5
27,808 - GFF6895 0.12 -0.0
27,808 - GFF6895 0.12 +1.0
27,808 - GFF6895 0.12 -1.6
27,808 - GFF6895 0.12 -2.6
27,808 - GFF6895 0.12 -0.4
27,808 - GFF6895 0.12 +2.0
27,808 - GFF6895 0.12 +0.1
27,808 - GFF6895 0.12 -1.0
27,808 - GFF6895 0.12 -0.5
27,808 - GFF6895 0.12 -1.7
27,808 - GFF6895 0.12 -1.6
27,808 - GFF6895 0.12 +1.1
27,975 + GFF6895 0.39 +2.0
27,975 + GFF6895 0.39 -0.4
27,975 + GFF6895 0.39 -0.8
27,975 + GFF6895 0.39 +0.6
27,976 - GFF6895 0.39 +0.6
27,976 - GFF6895 0.39 -2.3
28,119 + GFF6895 0.62 +0.3
28,119 + GFF6895 0.62 -0.2
28,119 + GFF6895 0.62 -1.4
28,119 + GFF6895 0.62 -0.0
28,119 + GFF6895 0.62 +0.8
28,119 + GFF6895 0.62 -0.3
28,119 + GFF6895 0.62 +0.0
28,119 + GFF6895 0.62 -0.9
28,119 + GFF6895 0.62 +1.6
28,119 + GFF6895 0.62 +0.2
28,120 - GFF6895 0.62 +1.1
28,120 - GFF6895 0.62 +0.2
28,120 - GFF6895 0.62 -0.8
28,120 - GFF6895 0.62 -1.5
28,120 - GFF6895 0.62 +0.3
28,120 - GFF6895 0.62 +0.2
28,299 + +0.7
28,299 + -2.4
28,299 + -0.3
28,299 + -0.6
28,300 - -0.3
28,359 + +0.6
28,359 + -0.4
28,359 + -0.2
28,359 + +0.7
28,359 + -0.4
28,359 + -1.5
28,359 + -1.9
28,360 - +1.0
28,360 - -0.8
28,360 - +1.4
28,360 - -1.7
28,360 - +1.6
28,360 - -0.4
28,360 - -3.1
28,360 - -1.1
28,360 - -0.9
28,360 - -1.6
28,360 - +0.4
28,360 - -2.4
28,360 - -1.4
28,360 - +0.7
28,455 + +1.4
28,455 + +0.8
28,455 + -1.6
28,455 + -1.5
28,456 - +1.4
28,456 - -1.7
28,456 - -1.5
28,456 - +0.1
28,456 - +1.5
28,557 + GFF6896 0.18 -1.1
28,558 + GFF6896 0.18 -0.8
28,558 - GFF6896 0.18 -2.8
28,860 + GFF6896 0.49 -0.4
28,860 + GFF6896 0.49 -0.4
28,860 + GFF6896 0.49 +1.8
28,860 + GFF6896 0.49 -1.7
28,860 + GFF6896 0.49 +2.0
28,861 - GFF6896 0.49 +0.8
28,861 - GFF6896 0.49 -0.9
28,861 - GFF6896 0.49 -0.6
28,861 - GFF6896 0.49 +0.0
28,861 - GFF6896 0.49 -2.1
28,861 - GFF6896 0.49 -0.8

Or see this region's nucleotide sequence