Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6839 and GFF6840 are separated by 112 nucleotides GFF6840 and GFF6841 are separated by 74 nucleotides GFF6841 and GFF6842 are separated by 18 nucleotides GFF6842 and GFF6843 are separated by 8 nucleotides GFF6843 and GFF6844 are separated by 29 nucleotides
GFF6839 - hypothetical protein, at 23,346 to 24,131
GFF6839
GFF6840 - Putative transmembrane protein, at 24,244 to 24,915
GFF6840
GFF6841 - hypothetical protein, at 24,990 to 25,487
GFF6841
GFF6842 - no description, at 25,506 to 25,760
GFF6842
GFF6843 - FIG00958542: hypothetical protein, at 25,769 to 26,329
GFF6843
GFF6844 - Putative PpiC-type peptidyl-prolyl cis-trans isomerase precursor associated with VreARI signaling system, at 26,359 to 27,273
GFF6844
Position (kb) 24
25
26 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 24.058 kb on + strand at 24.058 kb on + strand at 24.059 kb on - strand at 24.059 kb on - strand at 24.059 kb on - strand at 24.210 kb on - strand at 24.264 kb on + strand at 24.302 kb on + strand at 24.302 kb on + strand at 24.302 kb on + strand at 24.302 kb on + strand at 24.302 kb on + strand at 24.303 kb on - strand at 24.401 kb on + strand, within GFF6840 at 24.401 kb on + strand, within GFF6840 at 24.402 kb on - strand, within GFF6840 at 24.402 kb on - strand, within GFF6840 at 24.416 kb on + strand, within GFF6840 at 24.417 kb on - strand, within GFF6840 at 24.417 kb on - strand, within GFF6840 at 24.479 kb on + strand, within GFF6840 at 24.479 kb on + strand, within GFF6840 at 24.479 kb on + strand, within GFF6840 at 24.480 kb on - strand, within GFF6840 at 24.480 kb on - strand, within GFF6840 at 24.480 kb on - strand, within GFF6840 at 24.482 kb on + strand, within GFF6840 at 24.482 kb on + strand, within GFF6840 at 24.482 kb on + strand, within GFF6840 at 24.483 kb on - strand, within GFF6840 at 24.494 kb on + strand, within GFF6840 at 24.494 kb on + strand, within GFF6840 at 24.495 kb on - strand, within GFF6840 at 24.752 kb on + strand, within GFF6840 at 24.752 kb on + strand, within GFF6840 at 24.753 kb on - strand, within GFF6840 at 24.753 kb on - strand, within GFF6840 at 25.009 kb on + strand at 25.009 kb on + strand at 25.009 kb on + strand at 25.009 kb on + strand at 25.009 kb on + strand at 25.009 kb on + strand at 25.009 kb on + strand at 25.009 kb on + strand at 25.009 kb on + strand at 25.010 kb on - strand at 25.010 kb on - strand at 25.041 kb on + strand, within GFF6841 at 25.041 kb on + strand, within GFF6841 at 25.042 kb on - strand, within GFF6841 at 25.149 kb on + strand, within GFF6841 at 25.150 kb on - strand, within GFF6841 at 25.150 kb on - strand, within GFF6841 at 25.150 kb on - strand, within GFF6841 at 25.150 kb on - strand, within GFF6841 at 25.150 kb on - strand, within GFF6841 at 25.150 kb on - strand, within GFF6841 at 25.464 kb on + strand at 25.869 kb on + strand, within GFF6843 at 25.870 kb on - strand, within GFF6843 at 25.870 kb on - strand, within GFF6843 at 25.870 kb on - strand, within GFF6843 at 25.870 kb on - strand, within GFF6843 at 25.870 kb on - strand, within GFF6843 at 25.935 kb on + strand, within GFF6843 at 25.935 kb on + strand, within GFF6843 at 25.936 kb on - strand, within GFF6843 at 25.936 kb on - strand, within GFF6843 at 26.103 kb on + strand, within GFF6843 at 26.103 kb on + strand, within GFF6843 at 26.104 kb on - strand, within GFF6843 at 26.104 kb on - strand, within GFF6843 at 26.438 kb on + strand at 26.439 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 24,058 + -0.4 24,058 + -1.6 24,059 - -0.5 24,059 - +1.0 24,059 - -1.0 24,210 - +0.2 24,264 + -0.3 24,302 + +0.6 24,302 + -1.4 24,302 + +2.3 24,302 + -0.2 24,302 + +0.0 24,303 - -1.1 24,401 + GFF6840 0.23 -2.9 24,401 + GFF6840 0.23 +1.4 24,402 - GFF6840 0.24 +1.2 24,402 - GFF6840 0.24 +0.2 24,416 + GFF6840 0.26 -3.3 24,417 - GFF6840 0.26 +1.0 24,417 - GFF6840 0.26 +0.0 24,479 + GFF6840 0.35 -3.1 24,479 + GFF6840 0.35 -0.8 24,479 + GFF6840 0.35 -2.8 24,480 - GFF6840 0.35 +0.9 24,480 - GFF6840 0.35 -1.9 24,480 - GFF6840 0.35 -1.2 24,482 + GFF6840 0.35 -0.3 24,482 + GFF6840 0.35 +0.5 24,482 + GFF6840 0.35 -1.0 24,483 - GFF6840 0.36 -0.9 24,494 + GFF6840 0.37 -3.0 24,494 + GFF6840 0.37 -2.4 24,495 - GFF6840 0.37 +1.5 24,752 + GFF6840 0.76 -3.3 24,752 + GFF6840 0.76 -2.0 24,753 - GFF6840 0.76 -1.9 24,753 - GFF6840 0.76 -1.9 25,009 + +0.8 25,009 + -1.5 25,009 + -1.2 25,009 + -1.4 25,009 + +0.4 25,009 + -1.6 25,009 + -0.4 25,009 + +2.0 25,009 + +1.0 25,010 - +0.2 25,010 - -1.2 25,041 + GFF6841 0.10 -3.2 25,041 + GFF6841 0.10 +0.5 25,042 - GFF6841 0.10 +0.2 25,149 + GFF6841 0.32 -1.5 25,150 - GFF6841 0.32 +1.0 25,150 - GFF6841 0.32 +1.8 25,150 - GFF6841 0.32 -0.4 25,150 - GFF6841 0.32 +2.0 25,150 - GFF6841 0.32 +0.8 25,150 - GFF6841 0.32 +0.4 25,464 + -2.6 25,869 + GFF6843 0.18 -0.8 25,870 - GFF6843 0.18 -2.5 25,870 - GFF6843 0.18 -0.9 25,870 - GFF6843 0.18 +1.5 25,870 - GFF6843 0.18 -1.4 25,870 - GFF6843 0.18 +0.3 25,935 + GFF6843 0.30 +1.5 25,935 + GFF6843 0.30 +1.1 25,936 - GFF6843 0.30 +0.5 25,936 - GFF6843 0.30 -0.2 26,103 + GFF6843 0.60 -1.1 26,103 + GFF6843 0.60 -1.0 26,104 - GFF6843 0.60 -0.4 26,104 - GFF6843 0.60 -0.1 26,438 + -3.1 26,439 - +1.0
Or see this region's nucleotide sequence