Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6739 and GFF6740 are separated by 204 nucleotides GFF6740 and GFF6741 are separated by 224 nucleotides
GFF6739 - Putative diheme cytochrome c-553, at 52,313 to 53,617
GFF6739
GFF6740 - hypothetical protein, at 53,822 to 54,547
GFF6740
GFF6741 - UPF0053 inner membrane protein YoaE, at 54,772 to 56,340
GFF6741
Position (kb) 53
54
55 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 52.898 kb on + strand, within GFF6739 at 52.898 kb on + strand, within GFF6739 at 52.898 kb on + strand, within GFF6739 at 52.899 kb on - strand, within GFF6739 at 52.899 kb on - strand, within GFF6739 at 52.899 kb on - strand, within GFF6739 at 52.899 kb on - strand, within GFF6739 at 52.899 kb on - strand, within GFF6739 at 53.012 kb on + strand, within GFF6739 at 53.012 kb on + strand, within GFF6739 at 53.012 kb on + strand, within GFF6739 at 53.013 kb on - strand, within GFF6739 at 53.075 kb on + strand, within GFF6739 at 53.486 kb on + strand, within GFF6739 at 53.487 kb on - strand at 53.487 kb on - strand at 53.510 kb on + strand at 53.511 kb on - strand at 53.511 kb on - strand at 53.543 kb on + strand at 53.544 kb on - strand at 53.544 kb on - strand at 53.623 kb on + strand at 53.624 kb on - strand at 53.658 kb on - strand at 53.672 kb on - strand at 53.672 kb on - strand at 53.672 kb on - strand at 53.758 kb on - strand at 53.828 kb on - strand at 53.828 kb on - strand at 53.864 kb on + strand at 53.864 kb on + strand at 53.864 kb on + strand at 53.864 kb on + strand at 53.864 kb on + strand at 53.864 kb on + strand at 53.864 kb on + strand at 53.865 kb on - strand at 53.865 kb on - strand at 53.895 kb on - strand, within GFF6740 at 54.020 kb on + strand, within GFF6740 at 54.106 kb on - strand, within GFF6740 at 54.106 kb on - strand, within GFF6740 at 55.414 kb on + strand, within GFF6741 at 55.420 kb on + strand, within GFF6741 at 55.420 kb on + strand, within GFF6741
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 52,898 + GFF6739 0.45 +1.5 52,898 + GFF6739 0.45 +0.5 52,898 + GFF6739 0.45 +1.9 52,899 - GFF6739 0.45 -2.6 52,899 - GFF6739 0.45 +0.5 52,899 - GFF6739 0.45 -0.3 52,899 - GFF6739 0.45 +2.4 52,899 - GFF6739 0.45 +0.1 53,012 + GFF6739 0.54 -0.9 53,012 + GFF6739 0.54 +0.4 53,012 + GFF6739 0.54 +0.6 53,013 - GFF6739 0.54 -0.2 53,075 + GFF6739 0.58 -1.6 53,486 + GFF6739 0.90 -0.9 53,487 - +0.3 53,487 - -1.6 53,510 + -2.1 53,511 - -2.2 53,511 - +0.5 53,543 + +1.8 53,544 - +0.9 53,544 - -2.9 53,623 + +1.6 53,624 - +1.0 53,658 - -1.5 53,672 - -1.1 53,672 - +1.1 53,672 - -0.4 53,758 - +0.7 53,828 - -0.2 53,828 - +1.6 53,864 + -3.1 53,864 + +1.5 53,864 + -1.9 53,864 + -1.1 53,864 + +0.5 53,864 + -0.2 53,864 + -2.0 53,865 - -1.7 53,865 - -0.9 53,895 - GFF6740 0.10 -2.0 54,020 + GFF6740 0.27 -2.2 54,106 - GFF6740 0.39 +0.3 54,106 - GFF6740 0.39 -1.4 55,414 + GFF6741 0.41 -0.0 55,420 + GFF6741 0.41 +0.5 55,420 + GFF6741 0.41 -0.2
Or see this region's nucleotide sequence