Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6722 and GFF6723 are separated by 3 nucleotides GFF6723 and GFF6724 are separated by 74 nucleotides
GFF6722 - Glutamate/aspartate ABC transporter, substrate-binding protein GltI (TC 3.A.1.3.4), at 31,626 to 32,522
GFF6722
GFF6723 - Cysteine desulfurase (EC 2.8.1.7), at 32,526 to 33,821
GFF6723
GFF6724 - hypothetical protein, at 33,896 to 35,020
GFF6724
Position (kb) 32
33
34 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 31.776 kb on + strand, within GFF6722 at 31.776 kb on + strand, within GFF6722 at 31.885 kb on - strand, within GFF6722 at 32.220 kb on + strand, within GFF6722 at 32.221 kb on - strand, within GFF6722 at 32.221 kb on - strand, within GFF6722 at 32.280 kb on + strand, within GFF6722 at 32.280 kb on + strand, within GFF6722 at 32.412 kb on + strand, within GFF6722 at 32.412 kb on + strand, within GFF6722 at 32.412 kb on + strand, within GFF6722 at 32.412 kb on + strand, within GFF6722 at 32.413 kb on - strand, within GFF6722 at 32.493 kb on + strand at 32.493 kb on + strand at 32.646 kb on + strand at 32.646 kb on + strand at 32.647 kb on - strand at 32.827 kb on - strand, within GFF6723 at 32.827 kb on - strand, within GFF6723 at 32.827 kb on - strand, within GFF6723 at 32.827 kb on - strand, within GFF6723 at 33.072 kb on + strand, within GFF6723 at 33.072 kb on + strand, within GFF6723 at 33.072 kb on + strand, within GFF6723 at 33.073 kb on - strand, within GFF6723 at 33.150 kb on + strand, within GFF6723 at 33.150 kb on + strand, within GFF6723 at 33.150 kb on + strand, within GFF6723 at 33.150 kb on + strand, within GFF6723 at 33.150 kb on + strand, within GFF6723 at 33.150 kb on + strand, within GFF6723 at 33.150 kb on + strand, within GFF6723 at 33.151 kb on - strand, within GFF6723 at 33.151 kb on - strand, within GFF6723 at 33.151 kb on - strand, within GFF6723 at 33.151 kb on - strand, within GFF6723 at 33.151 kb on - strand, within GFF6723 at 33.151 kb on - strand, within GFF6723 at 33.237 kb on + strand, within GFF6723 at 33.393 kb on + strand, within GFF6723 at 33.394 kb on - strand, within GFF6723 at 33.646 kb on - strand, within GFF6723 at 33.669 kb on + strand, within GFF6723 at 33.669 kb on + strand, within GFF6723 at 33.669 kb on + strand, within GFF6723 at 33.694 kb on - strand at 33.829 kb on - strand at 33.829 kb on - strand at 33.838 kb on + strand at 33.839 kb on - strand at 33.849 kb on + strand at 33.849 kb on + strand at 33.850 kb on - strand at 34.268 kb on + strand, within GFF6724 at 34.268 kb on + strand, within GFF6724 at 34.352 kb on + strand, within GFF6724 at 34.355 kb on + strand, within GFF6724 at 34.355 kb on + strand, within GFF6724 at 34.355 kb on + strand, within GFF6724 at 34.355 kb on + strand, within GFF6724 at 34.356 kb on - strand, within GFF6724 at 34.356 kb on - strand, within GFF6724 at 34.500 kb on - strand, within GFF6724 at 34.500 kb on - strand, within GFF6724 at 34.517 kb on + strand, within GFF6724 at 34.518 kb on - strand, within GFF6724 at 34.644 kb on - strand, within GFF6724 at 34.686 kb on - strand, within GFF6724 at 34.686 kb on - strand, within GFF6724 at 34.755 kb on - strand, within GFF6724
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 31,776 + GFF6722 0.17 -1.1 31,776 + GFF6722 0.17 -2.3 31,885 - GFF6722 0.29 -1.0 32,220 + GFF6722 0.66 -2.4 32,221 - GFF6722 0.66 +0.9 32,221 - GFF6722 0.66 -0.1 32,280 + GFF6722 0.73 -1.4 32,280 + GFF6722 0.73 -2.8 32,412 + GFF6722 0.88 -2.9 32,412 + GFF6722 0.88 -0.5 32,412 + GFF6722 0.88 -2.3 32,412 + GFF6722 0.88 +0.7 32,413 - GFF6722 0.88 -2.0 32,493 + +0.1 32,493 + -2.5 32,646 + -1.3 32,646 + -0.4 32,647 - -0.9 32,827 - GFF6723 0.23 -0.6 32,827 - GFF6723 0.23 -1.0 32,827 - GFF6723 0.23 -2.3 32,827 - GFF6723 0.23 +0.7 33,072 + GFF6723 0.42 -1.8 33,072 + GFF6723 0.42 -0.2 33,072 + GFF6723 0.42 -3.2 33,073 - GFF6723 0.42 +0.0 33,150 + GFF6723 0.48 +0.8 33,150 + GFF6723 0.48 -0.2 33,150 + GFF6723 0.48 -2.5 33,150 + GFF6723 0.48 -0.5 33,150 + GFF6723 0.48 -1.5 33,150 + GFF6723 0.48 -2.5 33,150 + GFF6723 0.48 -1.3 33,151 - GFF6723 0.48 -1.8 33,151 - GFF6723 0.48 +0.5 33,151 - GFF6723 0.48 -2.0 33,151 - GFF6723 0.48 -0.3 33,151 - GFF6723 0.48 +3.1 33,151 - GFF6723 0.48 -0.4 33,237 + GFF6723 0.55 +0.1 33,393 + GFF6723 0.67 -1.3 33,394 - GFF6723 0.67 -1.2 33,646 - GFF6723 0.86 -0.3 33,669 + GFF6723 0.88 +1.0 33,669 + GFF6723 0.88 -2.6 33,669 + GFF6723 0.88 -1.6 33,694 - -1.6 33,829 - -2.5 33,829 - -0.5 33,838 + -0.8 33,839 - -0.8 33,849 + +0.5 33,849 + +0.6 33,850 - -1.4 34,268 + GFF6724 0.33 -1.7 34,268 + GFF6724 0.33 +0.1 34,352 + GFF6724 0.41 +0.2 34,355 + GFF6724 0.41 +0.5 34,355 + GFF6724 0.41 -0.3 34,355 + GFF6724 0.41 -0.8 34,355 + GFF6724 0.41 -1.0 34,356 - GFF6724 0.41 -0.8 34,356 - GFF6724 0.41 +1.6 34,500 - GFF6724 0.54 -0.9 34,500 - GFF6724 0.54 +0.4 34,517 + GFF6724 0.55 -1.2 34,518 - GFF6724 0.55 -1.3 34,644 - GFF6724 0.66 +1.1 34,686 - GFF6724 0.70 -0.5 34,686 - GFF6724 0.70 +1.1 34,755 - GFF6724 0.76 +0.3
Or see this region's nucleotide sequence