Strain Fitness in Variovorax sp. SCN45 around GFF670

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF669 and GFF670 are separated by 9 nucleotidesGFF670 and GFF671 are separated by 120 nucleotidesGFF671 and GFF672 are separated by 18 nucleotides GFF669 - BUG/TctC family periplasmic protein, at 721,733 to 722,728 GFF669 GFF670 - putative amidase Psyr_2260, at 722,738 to 724,282 GFF670 GFF671 - hypothetical protein, at 724,403 to 724,825 GFF671 GFF672 - Transcriptional regulator, LysR family, at 724,844 to 725,752 GFF672 Position (kb) 722 723 724 725Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 721.778 kb on + strandat 721.778 kb on + strandat 721.778 kb on + strandat 721.778 kb on + strandat 721.778 kb on + strandat 721.778 kb on + strandat 721.779 kb on - strandat 721.779 kb on - strandat 721.779 kb on - strandat 721.779 kb on - strandat 721.779 kb on - strandat 721.779 kb on - strandat 721.988 kb on + strand, within GFF669at 721.988 kb on + strand, within GFF669at 721.988 kb on + strand, within GFF669at 721.988 kb on + strand, within GFF669at 721.988 kb on + strand, within GFF669at 721.989 kb on - strand, within GFF669at 721.989 kb on - strand, within GFF669at 722.081 kb on + strand, within GFF669at 722.082 kb on - strand, within GFF669at 722.189 kb on + strand, within GFF669at 722.189 kb on + strand, within GFF669at 722.190 kb on - strand, within GFF669at 722.213 kb on + strand, within GFF669at 722.213 kb on + strand, within GFF669at 722.213 kb on + strand, within GFF669at 722.213 kb on + strand, within GFF669at 722.214 kb on - strand, within GFF669at 722.214 kb on - strand, within GFF669at 722.214 kb on - strand, within GFF669at 722.214 kb on - strand, within GFF669at 722.214 kb on - strand, within GFF669at 722.219 kb on + strand, within GFF669at 722.219 kb on + strand, within GFF669at 722.220 kb on - strand, within GFF669at 722.220 kb on - strand, within GFF669at 722.220 kb on - strand, within GFF669at 722.220 kb on - strand, within GFF669at 722.220 kb on - strand, within GFF669at 722.306 kb on + strand, within GFF669at 722.306 kb on + strand, within GFF669at 722.306 kb on + strand, within GFF669at 722.307 kb on - strand, within GFF669at 722.483 kb on + strand, within GFF669at 722.484 kb on - strand, within GFF669at 722.636 kb on + strandat 722.636 kb on + strandat 722.874 kb on + strandat 723.053 kb on + strand, within GFF670at 723.054 kb on - strand, within GFF670at 723.054 kb on - strand, within GFF670at 723.054 kb on - strand, within GFF670at 723.737 kb on + strand, within GFF670at 723.738 kb on - strand, within GFF670at 723.738 kb on - strand, within GFF670at 723.738 kb on - strand, within GFF670at 723.738 kb on - strand, within GFF670at 723.782 kb on + strand, within GFF670at 723.783 kb on - strand, within GFF670at 723.878 kb on + strand, within GFF670at 723.878 kb on + strand, within GFF670at 723.878 kb on + strand, within GFF670at 723.936 kb on - strand, within GFF670at 723.936 kb on - strand, within GFF670at 723.971 kb on + strand, within GFF670at 723.971 kb on + strand, within GFF670at 723.971 kb on + strand, within GFF670at 723.971 kb on + strand, within GFF670at 723.971 kb on + strand, within GFF670at 723.971 kb on + strand, within GFF670at 723.972 kb on - strand, within GFF670at 723.972 kb on - strand, within GFF670at 723.972 kb on - strand, within GFF670at 723.972 kb on - strand, within GFF670at 723.972 kb on - strand, within GFF670at 723.972 kb on - strand, within GFF670at 723.972 kb on - strand, within GFF670at 723.972 kb on - strand, within GFF670at 723.975 kb on - strand, within GFF670at 723.975 kb on - strand, within GFF670at 723.995 kb on + strand, within GFF670at 723.995 kb on + strand, within GFF670at 723.995 kb on + strand, within GFF670at 723.995 kb on + strand, within GFF670at 723.995 kb on + strand, within GFF670at 723.995 kb on + strand, within GFF670at 723.995 kb on + strand, within GFF670at 723.995 kb on + strand, within GFF670at 723.995 kb on + strand, within GFF670at 723.996 kb on - strand, within GFF670at 723.996 kb on - strand, within GFF670at 723.996 kb on - strand, within GFF670at 723.996 kb on - strand, within GFF670at 723.996 kb on - strand, within GFF670at 723.996 kb on - strand, within GFF670at 723.996 kb on - strand, within GFF670at 723.996 kb on - strand, within GFF670at 724.269 kb on + strandat 724.326 kb on - strandat 724.330 kb on + strandat 724.331 kb on - strandat 724.331 kb on - strandat 724.331 kb on - strandat 724.332 kb on + strandat 724.343 kb on + strandat 724.344 kb on - strandat 724.547 kb on + strand, within GFF671at 724.547 kb on + strand, within GFF671at 724.547 kb on + strand, within GFF671at 724.547 kb on + strand, within GFF671at 724.547 kb on + strand, within GFF671at 724.547 kb on + strand, within GFF671at 724.548 kb on - strand, within GFF671at 724.548 kb on - strand, within GFF671at 724.548 kb on - strand, within GFF671at 724.548 kb on - strand, within GFF671at 724.548 kb on - strand, within GFF671at 724.568 kb on + strand, within GFF671at 724.568 kb on + strand, within GFF671at 724.569 kb on - strand, within GFF671at 724.569 kb on - strand, within GFF671at 724.748 kb on + strand, within GFF671at 724.749 kb on - strand, within GFF671at 724.802 kb on + strandat 724.802 kb on + strandat 724.802 kb on + strandat 724.803 kb on - strandat 724.803 kb on - strandat 724.803 kb on - strandat 724.803 kb on - strandat 724.827 kb on + strandat 724.827 kb on + strandat 724.827 kb on + strandat 724.827 kb on + strandat 724.827 kb on + strandat 724.827 kb on + strandat 724.828 kb on - strandat 724.828 kb on - strandat 724.947 kb on + strand, within GFF672at 724.947 kb on + strand, within GFF672at 724.947 kb on + strand, within GFF672at 724.948 kb on - strand, within GFF672at 724.948 kb on - strand, within GFF672at 724.948 kb on - strand, within GFF672at 724.948 kb on - strand, within GFF672at 725.106 kb on + strand, within GFF672at 725.178 kb on + strand, within GFF672at 725.187 kb on + strand, within GFF672at 725.187 kb on + strand, within GFF672at 725.188 kb on - strand, within GFF672at 725.188 kb on - strand, within GFF672at 725.241 kb on + strand, within GFF672at 725.241 kb on + strand, within GFF672at 725.241 kb on + strand, within GFF672at 725.241 kb on + strand, within GFF672at 725.242 kb on - strand, within GFF672at 725.242 kb on - strand, within GFF672at 725.242 kb on - strand, within GFF672at 725.242 kb on - strand, within GFF672

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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721,778 + -1.1
721,778 + -1.1
721,778 + +1.6
721,778 + -1.2
721,778 + -1.9
721,778 + -1.8
721,779 - -1.0
721,779 - +0.6
721,779 - +0.8
721,779 - -0.3
721,779 - -2.1
721,779 - -1.3
721,988 + GFF669 0.26 -1.4
721,988 + GFF669 0.26 -0.5
721,988 + GFF669 0.26 +0.7
721,988 + GFF669 0.26 -2.6
721,988 + GFF669 0.26 -1.0
721,989 - GFF669 0.26 -1.3
721,989 - GFF669 0.26 -2.7
722,081 + GFF669 0.35 +1.1
722,082 - GFF669 0.35 -0.3
722,189 + GFF669 0.46 -0.7
722,189 + GFF669 0.46 +0.2
722,190 - GFF669 0.46 +0.2
722,213 + GFF669 0.48 +0.1
722,213 + GFF669 0.48 -1.5
722,213 + GFF669 0.48 -3.1
722,213 + GFF669 0.48 -2.5
722,214 - GFF669 0.48 -2.8
722,214 - GFF669 0.48 +1.3
722,214 - GFF669 0.48 -0.4
722,214 - GFF669 0.48 +0.2
722,214 - GFF669 0.48 -0.2
722,219 + GFF669 0.49 -2.3
722,219 + GFF669 0.49 +0.8
722,220 - GFF669 0.49 -0.6
722,220 - GFF669 0.49 -1.1
722,220 - GFF669 0.49 -2.5
722,220 - GFF669 0.49 -0.6
722,220 - GFF669 0.49 -0.1
722,306 + GFF669 0.58 +1.4
722,306 + GFF669 0.58 -1.1
722,306 + GFF669 0.58 +3.6
722,307 - GFF669 0.58 +1.8
722,483 + GFF669 0.75 +0.4
722,484 - GFF669 0.75 -0.5
722,636 + +0.6
722,636 + -1.4
722,874 + +3.3
723,053 + GFF670 0.20 -2.1
723,054 - GFF670 0.20 +2.0
723,054 - GFF670 0.20 -1.5
723,054 - GFF670 0.20 -0.2
723,737 + GFF670 0.65 +0.2
723,738 - GFF670 0.65 -1.0
723,738 - GFF670 0.65 +0.8
723,738 - GFF670 0.65 -0.4
723,738 - GFF670 0.65 +0.3
723,782 + GFF670 0.68 -0.8
723,783 - GFF670 0.68 +0.4
723,878 + GFF670 0.74 -1.2
723,878 + GFF670 0.74 -2.4
723,878 + GFF670 0.74 +0.5
723,936 - GFF670 0.78 +0.0
723,936 - GFF670 0.78 -0.5
723,971 + GFF670 0.80 -3.1
723,971 + GFF670 0.80 -0.1
723,971 + GFF670 0.80 -0.8
723,971 + GFF670 0.80 -1.6
723,971 + GFF670 0.80 -0.1
723,971 + GFF670 0.80 -0.6
723,972 - GFF670 0.80 -0.0
723,972 - GFF670 0.80 -0.2
723,972 - GFF670 0.80 -0.8
723,972 - GFF670 0.80 +0.2
723,972 - GFF670 0.80 -1.6
723,972 - GFF670 0.80 -2.4
723,972 - GFF670 0.80 -0.5
723,972 - GFF670 0.80 -0.3
723,975 - GFF670 0.80 -0.8
723,975 - GFF670 0.80 -1.1
723,995 + GFF670 0.81 -1.8
723,995 + GFF670 0.81 +0.9
723,995 + GFF670 0.81 -1.1
723,995 + GFF670 0.81 +1.0
723,995 + GFF670 0.81 -3.0
723,995 + GFF670 0.81 -0.6
723,995 + GFF670 0.81 -0.0
723,995 + GFF670 0.81 -1.9
723,995 + GFF670 0.81 +1.1
723,996 - GFF670 0.81 -1.1
723,996 - GFF670 0.81 -0.8
723,996 - GFF670 0.81 -0.2
723,996 - GFF670 0.81 +2.3
723,996 - GFF670 0.81 -3.8
723,996 - GFF670 0.81 -0.2
723,996 - GFF670 0.81 +0.9
723,996 - GFF670 0.81 +0.3
724,269 + -1.8
724,326 - +0.1
724,330 + -1.0
724,331 - -1.7
724,331 - +0.7
724,331 - +0.3
724,332 + -3.6
724,343 + +1.8
724,344 - -1.4
724,547 + GFF671 0.34 +1.7
724,547 + GFF671 0.34 -0.7
724,547 + GFF671 0.34 -0.8
724,547 + GFF671 0.34 -1.0
724,547 + GFF671 0.34 +1.0
724,547 + GFF671 0.34 +0.8
724,548 - GFF671 0.34 +0.7
724,548 - GFF671 0.34 -1.2
724,548 - GFF671 0.34 -2.6
724,548 - GFF671 0.34 -1.2
724,548 - GFF671 0.34 -2.6
724,568 + GFF671 0.39 -2.7
724,568 + GFF671 0.39 +0.9
724,569 - GFF671 0.39 +1.0
724,569 - GFF671 0.39 -1.8
724,748 + GFF671 0.82 +0.2
724,749 - GFF671 0.82 +0.8
724,802 + +1.0
724,802 + -2.3
724,802 + +1.6
724,803 - +1.8
724,803 - +1.0
724,803 - -2.5
724,803 - -2.4
724,827 + +0.6
724,827 + -1.9
724,827 + -2.1
724,827 + +0.4
724,827 + -2.6
724,827 + -0.9
724,828 - +1.2
724,828 - -0.2
724,947 + GFF672 0.11 -0.3
724,947 + GFF672 0.11 +1.8
724,947 + GFF672 0.11 -1.6
724,948 - GFF672 0.11 +0.6
724,948 - GFF672 0.11 -0.7
724,948 - GFF672 0.11 -1.1
724,948 - GFF672 0.11 -3.0
725,106 + GFF672 0.29 -1.9
725,178 + GFF672 0.37 -0.8
725,187 + GFF672 0.38 -2.1
725,187 + GFF672 0.38 -0.0
725,188 - GFF672 0.38 -0.7
725,188 - GFF672 0.38 -1.0
725,241 + GFF672 0.44 -0.3
725,241 + GFF672 0.44 -0.7
725,241 + GFF672 0.44 -0.9
725,241 + GFF672 0.44 +0.2
725,242 - GFF672 0.44 +2.0
725,242 - GFF672 0.44 -0.4
725,242 - GFF672 0.44 +1.5
725,242 - GFF672 0.44 +0.7

Or see this region's nucleotide sequence