Strain Fitness in Variovorax sp. SCN45 around GFF6679

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6678 and GFF6679 are separated by 208 nucleotidesGFF6679 and GFF6680 are separated by 62 nucleotides GFF6678 - Putative inner membrane protein, at 53,158 to 54,381 GFF6678 GFF6679 - hypothetical protein, at 54,590 to 54,874 GFF6679 GFF6680 - Aspartate ammonia-lyase (EC 4.3.1.1), at 54,937 to 56,592 GFF6680 Position (kb) 54 55Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 53.632 kb on + strand, within GFF6678at 53.632 kb on + strand, within GFF6678at 53.632 kb on + strand, within GFF6678at 53.632 kb on + strand, within GFF6678at 53.633 kb on - strand, within GFF6678at 53.633 kb on - strand, within GFF6678at 53.633 kb on - strand, within GFF6678at 53.633 kb on - strand, within GFF6678at 53.641 kb on + strand, within GFF6678at 53.642 kb on - strand, within GFF6678at 53.642 kb on - strand, within GFF6678at 53.653 kb on + strand, within GFF6678at 53.653 kb on + strand, within GFF6678at 53.851 kb on + strand, within GFF6678at 53.852 kb on - strand, within GFF6678at 53.852 kb on - strand, within GFF6678at 53.852 kb on - strand, within GFF6678at 53.852 kb on - strand, within GFF6678at 53.852 kb on - strand, within GFF6678at 53.852 kb on - strand, within GFF6678at 53.869 kb on + strand, within GFF6678at 53.869 kb on + strand, within GFF6678at 53.869 kb on + strand, within GFF6678at 53.869 kb on + strand, within GFF6678at 53.869 kb on + strand, within GFF6678at 53.869 kb on + strand, within GFF6678at 53.870 kb on - strand, within GFF6678at 53.870 kb on - strand, within GFF6678at 53.870 kb on - strand, within GFF6678at 53.875 kb on + strand, within GFF6678at 53.875 kb on + strand, within GFF6678at 53.876 kb on - strand, within GFF6678at 54.034 kb on + strand, within GFF6678at 54.034 kb on + strand, within GFF6678at 54.034 kb on + strand, within GFF6678at 54.034 kb on + strand, within GFF6678at 54.034 kb on + strand, within GFF6678at 54.034 kb on + strand, within GFF6678at 54.034 kb on + strand, within GFF6678at 54.035 kb on - strand, within GFF6678at 54.035 kb on - strand, within GFF6678at 54.035 kb on - strand, within GFF6678at 54.035 kb on - strand, within GFF6678at 54.035 kb on - strand, within GFF6678at 54.067 kb on + strand, within GFF6678at 54.079 kb on + strand, within GFF6678at 54.079 kb on + strand, within GFF6678at 54.079 kb on + strand, within GFF6678at 54.079 kb on + strand, within GFF6678at 54.079 kb on + strand, within GFF6678at 54.079 kb on + strand, within GFF6678at 54.079 kb on + strand, within GFF6678at 54.080 kb on - strand, within GFF6678at 54.080 kb on - strand, within GFF6678at 54.080 kb on - strand, within GFF6678at 54.127 kb on + strand, within GFF6678at 54.128 kb on - strand, within GFF6678at 54.136 kb on + strand, within GFF6678at 54.136 kb on + strand, within GFF6678at 54.136 kb on + strand, within GFF6678at 54.136 kb on + strand, within GFF6678at 54.136 kb on + strand, within GFF6678at 54.136 kb on + strand, within GFF6678at 54.136 kb on + strand, within GFF6678at 54.136 kb on + strand, within GFF6678at 54.136 kb on + strand, within GFF6678at 54.136 kb on + strand, within GFF6678at 54.136 kb on + strand, within GFF6678at 54.136 kb on + strand, within GFF6678at 54.136 kb on + strand, within GFF6678at 54.136 kb on + strand, within GFF6678at 54.137 kb on - strand, within GFF6678at 54.137 kb on - strand, within GFF6678at 54.137 kb on - strand, within GFF6678at 54.137 kb on - strand, within GFF6678at 54.137 kb on - strand, within GFF6678at 54.137 kb on - strand, within GFF6678at 54.137 kb on - strand, within GFF6678at 54.137 kb on - strand, within GFF6678at 54.137 kb on - strand, within GFF6678at 54.137 kb on - strand, within GFF6678at 54.137 kb on - strand, within GFF6678at 54.137 kb on - strand, within GFF6678at 54.137 kb on - strand, within GFF6678at 54.405 kb on + strandat 54.405 kb on + strandat 54.405 kb on + strandat 54.405 kb on + strandat 54.405 kb on + strandat 54.405 kb on + strandat 54.405 kb on + strandat 54.406 kb on - strandat 54.406 kb on - strandat 54.406 kb on - strandat 54.406 kb on - strandat 54.406 kb on - strandat 54.606 kb on + strandat 54.607 kb on - strandat 54.755 kb on + strand, within GFF6679at 54.776 kb on + strand, within GFF6679at 54.776 kb on + strand, within GFF6679at 54.776 kb on + strand, within GFF6679at 54.776 kb on + strand, within GFF6679at 54.776 kb on + strand, within GFF6679at 54.777 kb on + strand, within GFF6679at 54.872 kb on + strandat 54.873 kb on - strandat 54.897 kb on + strandat 54.897 kb on + strandat 54.897 kb on + strandat 54.898 kb on - strandat 54.898 kb on - strandat 54.898 kb on - strandat 55.633 kb on + strand, within GFF6680at 55.633 kb on + strand, within GFF6680at 55.633 kb on + strand, within GFF6680at 55.633 kb on + strand, within GFF6680at 55.633 kb on + strand, within GFF6680at 55.633 kb on + strand, within GFF6680at 55.633 kb on + strand, within GFF6680at 55.634 kb on - strand, within GFF6680

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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53,632 + GFF6678 0.39 -1.8
53,632 + GFF6678 0.39 -2.9
53,632 + GFF6678 0.39 -0.8
53,632 + GFF6678 0.39 +0.4
53,633 - GFF6678 0.39 -3.3
53,633 - GFF6678 0.39 -2.1
53,633 - GFF6678 0.39 +0.7
53,633 - GFF6678 0.39 -1.0
53,641 + GFF6678 0.39 +0.0
53,642 - GFF6678 0.40 -0.5
53,642 - GFF6678 0.40 +0.9
53,653 + GFF6678 0.40 -0.9
53,653 + GFF6678 0.40 -0.7
53,851 + GFF6678 0.57 +0.0
53,852 - GFF6678 0.57 +0.2
53,852 - GFF6678 0.57 -0.4
53,852 - GFF6678 0.57 -2.4
53,852 - GFF6678 0.57 -0.1
53,852 - GFF6678 0.57 -0.3
53,852 - GFF6678 0.57 +0.8
53,869 + GFF6678 0.58 +1.2
53,869 + GFF6678 0.58 -0.4
53,869 + GFF6678 0.58 -1.1
53,869 + GFF6678 0.58 -3.0
53,869 + GFF6678 0.58 -2.6
53,869 + GFF6678 0.58 -1.1
53,870 - GFF6678 0.58 +1.7
53,870 - GFF6678 0.58 +1.3
53,870 - GFF6678 0.58 +1.2
53,875 + GFF6678 0.59 +0.2
53,875 + GFF6678 0.59 -0.1
53,876 - GFF6678 0.59 -0.1
54,034 + GFF6678 0.72 +0.1
54,034 + GFF6678 0.72 -0.2
54,034 + GFF6678 0.72 -1.2
54,034 + GFF6678 0.72 +0.7
54,034 + GFF6678 0.72 +1.4
54,034 + GFF6678 0.72 +2.7
54,034 + GFF6678 0.72 +1.3
54,035 - GFF6678 0.72 -0.9
54,035 - GFF6678 0.72 -0.2
54,035 - GFF6678 0.72 -1.1
54,035 - GFF6678 0.72 +0.5
54,035 - GFF6678 0.72 +0.4
54,067 + GFF6678 0.74 +1.7
54,079 + GFF6678 0.75 -2.1
54,079 + GFF6678 0.75 +0.8
54,079 + GFF6678 0.75 -1.2
54,079 + GFF6678 0.75 +0.9
54,079 + GFF6678 0.75 -0.9
54,079 + GFF6678 0.75 -0.9
54,079 + GFF6678 0.75 -3.7
54,080 - GFF6678 0.75 -1.1
54,080 - GFF6678 0.75 +1.6
54,080 - GFF6678 0.75 -1.2
54,127 + GFF6678 0.79 -2.6
54,128 - GFF6678 0.79 -0.6
54,136 + GFF6678 0.80 -0.6
54,136 + GFF6678 0.80 +0.0
54,136 + GFF6678 0.80 +0.6
54,136 + GFF6678 0.80 -0.6
54,136 + GFF6678 0.80 +0.3
54,136 + GFF6678 0.80 -0.1
54,136 + GFF6678 0.80 -1.9
54,136 + GFF6678 0.80 +0.1
54,136 + GFF6678 0.80 -1.0
54,136 + GFF6678 0.80 -1.6
54,136 + GFF6678 0.80 -0.4
54,136 + GFF6678 0.80 -2.6
54,136 + GFF6678 0.80 -3.4
54,136 + GFF6678 0.80 -0.3
54,137 - GFF6678 0.80 -0.8
54,137 - GFF6678 0.80 +0.4
54,137 - GFF6678 0.80 +1.9
54,137 - GFF6678 0.80 +0.5
54,137 - GFF6678 0.80 -2.8
54,137 - GFF6678 0.80 -1.2
54,137 - GFF6678 0.80 +0.4
54,137 - GFF6678 0.80 -1.1
54,137 - GFF6678 0.80 +1.4
54,137 - GFF6678 0.80 -0.2
54,137 - GFF6678 0.80 +0.5
54,137 - GFF6678 0.80 -2.8
54,137 - GFF6678 0.80 -0.6
54,405 + +0.4
54,405 + -1.3
54,405 + +0.7
54,405 + -2.3
54,405 + +1.5
54,405 + -3.1
54,405 + -1.8
54,406 - +0.9
54,406 - +0.8
54,406 - +0.5
54,406 - -0.9
54,406 - -3.0
54,606 + -1.5
54,607 - -1.2
54,755 + GFF6679 0.58 -1.9
54,776 + GFF6679 0.65 +1.2
54,776 + GFF6679 0.65 +0.6
54,776 + GFF6679 0.65 +0.3
54,776 + GFF6679 0.65 -2.1
54,776 + GFF6679 0.65 +0.4
54,777 + GFF6679 0.66 +1.8
54,872 + -0.3
54,873 - -1.4
54,897 + -0.0
54,897 + -1.4
54,897 + -1.3
54,898 - -1.1
54,898 - -0.2
54,898 - -1.6
55,633 + GFF6680 0.42 +0.1
55,633 + GFF6680 0.42 +1.3
55,633 + GFF6680 0.42 -2.1
55,633 + GFF6680 0.42 +0.7
55,633 + GFF6680 0.42 -0.3
55,633 + GFF6680 0.42 -0.5
55,633 + GFF6680 0.42 +0.2
55,634 - GFF6680 0.42 -0.6

Or see this region's nucleotide sequence