Strain Fitness in Variovorax sp. SCN45 around GFF6604

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6602 and GFF6603 overlap by 4 nucleotidesGFF6603 and GFF6604 overlap by 4 nucleotidesGFF6604 and GFF6605 overlap by 4 nucleotidesGFF6605 and GFF6606 overlap by 4 nucleotidesGFF6606 and GFF6607 are separated by 26 nucleotides GFF6602 - Type IV secretory pathway, protease TraF, at 49,152 to 49,727 GFF6602 GFF6603 - Glycosidases, at 49,724 to 50,269 GFF6603 GFF6604 - FIG00457034: hypothetical protein, at 50,266 to 50,538 GFF6604 GFF6605 - ParA-like protein, at 50,535 to 51,173 GFF6605 GFF6606 - no description, at 51,170 to 51,397 GFF6606 GFF6607 - Plasmid replication initiator protein, at 51,424 to 52,290 GFF6607 Position (kb) 50 51Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 49.383 kb on + strand, within GFF6602at 49.384 kb on - strand, within GFF6602at 49.384 kb on - strand, within GFF6602at 49.422 kb on - strand, within GFF6602at 49.422 kb on - strand, within GFF6602at 49.447 kb on + strand, within GFF6602at 49.565 kb on - strand, within GFF6602at 49.597 kb on + strand, within GFF6602at 49.597 kb on + strand, within GFF6602at 49.598 kb on - strand, within GFF6602at 49.598 kb on - strand, within GFF6602at 49.598 kb on - strand, within GFF6602at 49.715 kb on + strandat 49.715 kb on + strandat 49.773 kb on + strandat 49.919 kb on + strand, within GFF6603at 49.920 kb on - strand, within GFF6603at 49.920 kb on - strand, within GFF6603at 49.920 kb on - strand, within GFF6603at 50.020 kb on - strand, within GFF6603at 50.099 kb on + strand, within GFF6603at 50.100 kb on - strand, within GFF6603at 50.130 kb on + strand, within GFF6603at 50.130 kb on + strand, within GFF6603at 50.131 kb on - strand, within GFF6603at 50.131 kb on - strand, within GFF6603at 50.131 kb on - strand, within GFF6603at 50.131 kb on - strand, within GFF6603at 50.131 kb on - strand, within GFF6603at 50.154 kb on + strand, within GFF6603at 50.154 kb on + strand, within GFF6603at 50.154 kb on + strand, within GFF6603at 50.155 kb on - strand, within GFF6603at 50.155 kb on - strand, within GFF6603at 50.155 kb on - strand, within GFF6603at 50.414 kb on + strand, within GFF6604at 51.259 kb on + strand, within GFF6606at 51.259 kb on + strand, within GFF6606at 51.262 kb on + strand, within GFF6606at 51.263 kb on - strand, within GFF6606at 51.263 kb on - strand, within GFF6606at 51.263 kb on - strand, within GFF6606at 51.263 kb on - strand, within GFF6606at 51.266 kb on + strand, within GFF6606at 51.266 kb on + strand, within GFF6606at 51.266 kb on + strand, within GFF6606at 51.267 kb on - strand, within GFF6606at 51.267 kb on - strand, within GFF6606at 51.267 kb on - strand, within GFF6606at 51.267 kb on - strand, within GFF6606at 51.267 kb on - strand, within GFF6606at 51.267 kb on - strand, within GFF6606at 51.271 kb on + strand, within GFF6606at 51.271 kb on + strand, within GFF6606at 51.271 kb on + strand, within GFF6606at 51.271 kb on + strand, within GFF6606at 51.272 kb on - strand, within GFF6606at 51.275 kb on + strand, within GFF6606at 51.275 kb on + strand, within GFF6606at 51.276 kb on - strand, within GFF6606at 51.276 kb on - strand, within GFF6606at 51.281 kb on + strand, within GFF6606at 51.281 kb on + strand, within GFF6606at 51.282 kb on - strand, within GFF6606at 51.282 kb on - strand, within GFF6606at 51.284 kb on + strand, within GFF6606at 51.284 kb on + strand, within GFF6606at 51.284 kb on + strand, within GFF6606at 51.284 kb on + strand, within GFF6606at 51.284 kb on + strand, within GFF6606at 51.285 kb on - strand, within GFF6606at 51.285 kb on - strand, within GFF6606at 51.285 kb on - strand, within GFF6606at 51.285 kb on - strand, within GFF6606at 51.285 kb on - strand, within GFF6606at 51.285 kb on - strand, within GFF6606at 51.289 kb on + strand, within GFF6606at 51.290 kb on - strand, within GFF6606at 51.292 kb on - strand, within GFF6606at 51.315 kb on - strand, within GFF6606at 51.345 kb on + strand, within GFF6606at 51.393 kb on - strandat 51.454 kb on + strandat 51.454 kb on + strandat 51.454 kb on + strandat 51.454 kb on + strandat 51.454 kb on + strandat 51.454 kb on + strandat 51.454 kb on + strandat 51.455 kb on - strandat 51.455 kb on - strandat 51.455 kb on - strandat 51.455 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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49,383 + GFF6602 0.40 -1.2
49,384 - GFF6602 0.40 -0.2
49,384 - GFF6602 0.40 -1.2
49,422 - GFF6602 0.47 +0.4
49,422 - GFF6602 0.47 -0.6
49,447 + GFF6602 0.51 +1.3
49,565 - GFF6602 0.72 -4.0
49,597 + GFF6602 0.77 +0.6
49,597 + GFF6602 0.77 -1.0
49,598 - GFF6602 0.77 +0.5
49,598 - GFF6602 0.77 -1.4
49,598 - GFF6602 0.77 +0.0
49,715 + +0.9
49,715 + -1.4
49,773 + +0.1
49,919 + GFF6603 0.36 -1.1
49,920 - GFF6603 0.36 +1.2
49,920 - GFF6603 0.36 -0.3
49,920 - GFF6603 0.36 -1.0
50,020 - GFF6603 0.54 -0.5
50,099 + GFF6603 0.69 +2.0
50,100 - GFF6603 0.69 -1.7
50,130 + GFF6603 0.74 +0.4
50,130 + GFF6603 0.74 -2.6
50,131 - GFF6603 0.75 -0.3
50,131 - GFF6603 0.75 -0.4
50,131 - GFF6603 0.75 -1.3
50,131 - GFF6603 0.75 -0.8
50,131 - GFF6603 0.75 -1.2
50,154 + GFF6603 0.79 -0.6
50,154 + GFF6603 0.79 +0.4
50,154 + GFF6603 0.79 +1.0
50,155 - GFF6603 0.79 +1.2
50,155 - GFF6603 0.79 -2.7
50,155 - GFF6603 0.79 -0.6
50,414 + GFF6604 0.54 +0.5
51,259 + GFF6606 0.39 -0.3
51,259 + GFF6606 0.39 -1.4
51,262 + GFF6606 0.40 +1.5
51,263 - GFF6606 0.41 -1.0
51,263 - GFF6606 0.41 -1.7
51,263 - GFF6606 0.41 +2.3
51,263 - GFF6606 0.41 -0.5
51,266 + GFF6606 0.42 -0.1
51,266 + GFF6606 0.42 -0.9
51,266 + GFF6606 0.42 +0.1
51,267 - GFF6606 0.43 -0.8
51,267 - GFF6606 0.43 +0.7
51,267 - GFF6606 0.43 -0.6
51,267 - GFF6606 0.43 -0.3
51,267 - GFF6606 0.43 -1.1
51,267 - GFF6606 0.43 -0.3
51,271 + GFF6606 0.44 +0.6
51,271 + GFF6606 0.44 -2.2
51,271 + GFF6606 0.44 +0.1
51,271 + GFF6606 0.44 -1.4
51,272 - GFF6606 0.45 -2.2
51,275 + GFF6606 0.46 +1.0
51,275 + GFF6606 0.46 -1.9
51,276 - GFF6606 0.46 +0.4
51,276 - GFF6606 0.46 -0.1
51,281 + GFF6606 0.49 -0.4
51,281 + GFF6606 0.49 +0.0
51,282 - GFF6606 0.49 -0.6
51,282 - GFF6606 0.49 +1.2
51,284 + GFF6606 0.50 +0.3
51,284 + GFF6606 0.50 +1.3
51,284 + GFF6606 0.50 -0.3
51,284 + GFF6606 0.50 -0.7
51,284 + GFF6606 0.50 +0.5
51,285 - GFF6606 0.50 -0.8
51,285 - GFF6606 0.50 -1.6
51,285 - GFF6606 0.50 -0.6
51,285 - GFF6606 0.50 -0.2
51,285 - GFF6606 0.50 -3.3
51,285 - GFF6606 0.50 -1.5
51,289 + GFF6606 0.52 -0.3
51,290 - GFF6606 0.53 -1.9
51,292 - GFF6606 0.54 -2.5
51,315 - GFF6606 0.64 -0.6
51,345 + GFF6606 0.77 +0.5
51,393 - -0.9
51,454 + -1.0
51,454 + -1.7
51,454 + -0.3
51,454 + -1.2
51,454 + +1.1
51,454 + -0.6
51,454 + +0.4
51,455 - -0.9
51,455 - -0.6
51,455 - -1.7
51,455 - +0.2

Or see this region's nucleotide sequence