Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6460 and GFF6461 are separated by 14 nucleotides GFF6461 and GFF6462 overlap by 4 nucleotides GFF6462 and GFF6463 are separated by 11 nucleotides GFF6463 and GFF6464 are separated by 141 nucleotides
GFF6460 - Sensor protein BasS/PmrB (activates BasR/PmrA), at 37,377 to 38,732
GFF6460
GFF6461 - Thioesterase superfamily, at 38,747 to 39,169
GFF6461
GFF6462 - Integral membrane protein, at 39,166 to 40,065
GFF6462
GFF6463 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 40,077 to 40,859
GFF6463
GFF6464 - Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1), at 41,001 to 42,698
GFF6464
Position (kb) 39
40
41 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 38.916 kb on + strand, within GFF6461 at 38.916 kb on + strand, within GFF6461 at 38.916 kb on + strand, within GFF6461 at 38.917 kb on - strand, within GFF6461 at 38.917 kb on - strand, within GFF6461 at 38.917 kb on - strand, within GFF6461 at 38.917 kb on - strand, within GFF6461 at 38.917 kb on - strand, within GFF6461 at 38.917 kb on - strand, within GFF6461 at 38.917 kb on - strand, within GFF6461 at 38.917 kb on - strand, within GFF6461 at 38.917 kb on - strand, within GFF6461 at 38.917 kb on - strand, within GFF6461 at 38.917 kb on - strand, within GFF6461 at 38.917 kb on - strand, within GFF6461 at 38.917 kb on - strand, within GFF6461 at 38.917 kb on - strand, within GFF6461 at 38.917 kb on - strand, within GFF6461 at 38.917 kb on - strand, within GFF6461 at 38.943 kb on + strand, within GFF6461 at 39.066 kb on + strand, within GFF6461 at 39.066 kb on + strand, within GFF6461 at 39.066 kb on + strand, within GFF6461 at 39.067 kb on - strand, within GFF6461 at 39.067 kb on - strand, within GFF6461 at 39.067 kb on - strand, within GFF6461 at 39.132 kb on + strand at 39.133 kb on - strand at 39.133 kb on - strand at 39.266 kb on + strand, within GFF6462 at 39.266 kb on + strand, within GFF6462 at 39.266 kb on + strand, within GFF6462 at 39.266 kb on + strand, within GFF6462 at 39.266 kb on + strand, within GFF6462 at 39.267 kb on - strand, within GFF6462 at 39.267 kb on - strand, within GFF6462 at 39.563 kb on + strand, within GFF6462 at 39.564 kb on - strand, within GFF6462 at 39.564 kb on - strand, within GFF6462 at 39.564 kb on - strand, within GFF6462 at 39.564 kb on - strand, within GFF6462 at 39.833 kb on + strand, within GFF6462 at 39.833 kb on + strand, within GFF6462 at 39.833 kb on + strand, within GFF6462 at 39.834 kb on - strand, within GFF6462 at 39.834 kb on - strand, within GFF6462 at 39.834 kb on - strand, within GFF6462 at 39.836 kb on + strand, within GFF6462 at 39.837 kb on - strand, within GFF6462 at 40.264 kb on + strand, within GFF6463 at 40.264 kb on + strand, within GFF6463 at 40.360 kb on + strand, within GFF6463 at 40.360 kb on + strand, within GFF6463 at 40.361 kb on - strand, within GFF6463 at 40.361 kb on - strand, within GFF6463 at 40.361 kb on - strand, within GFF6463 at 40.361 kb on - strand, within GFF6463 at 40.361 kb on - strand, within GFF6463 at 40.361 kb on - strand, within GFF6463 at 40.407 kb on - strand, within GFF6463 at 40.407 kb on - strand, within GFF6463 at 40.429 kb on + strand, within GFF6463 at 40.429 kb on + strand, within GFF6463 at 40.429 kb on + strand, within GFF6463 at 40.429 kb on + strand, within GFF6463 at 40.429 kb on + strand, within GFF6463 at 40.429 kb on + strand, within GFF6463 at 40.430 kb on - strand, within GFF6463 at 40.430 kb on - strand, within GFF6463 at 40.430 kb on - strand, within GFF6463 at 40.430 kb on - strand, within GFF6463 at 40.430 kb on - strand, within GFF6463 at 40.430 kb on - strand, within GFF6463 at 40.430 kb on - strand, within GFF6463 at 40.430 kb on - strand, within GFF6463 at 40.525 kb on + strand, within GFF6463 at 40.526 kb on - strand, within GFF6463 at 40.526 kb on - strand, within GFF6463 at 40.526 kb on - strand, within GFF6463 at 40.852 kb on + strand at 40.852 kb on + strand at 40.852 kb on + strand at 40.852 kb on + strand at 40.852 kb on + strand at 40.852 kb on + strand at 40.852 kb on + strand at 40.852 kb on + strand at 40.852 kb on + strand at 40.852 kb on + strand at 40.852 kb on + strand at 40.853 kb on - strand at 40.853 kb on - strand at 40.853 kb on - strand at 40.853 kb on - strand at 40.853 kb on - strand at 40.940 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 38,916 + GFF6461 0.40 -2.1 38,916 + GFF6461 0.40 +2.0 38,916 + GFF6461 0.40 +0.2 38,917 - GFF6461 0.40 -2.0 38,917 - GFF6461 0.40 -1.9 38,917 - GFF6461 0.40 -1.4 38,917 - GFF6461 0.40 +0.1 38,917 - GFF6461 0.40 -0.4 38,917 - GFF6461 0.40 -1.1 38,917 - GFF6461 0.40 -3.5 38,917 - GFF6461 0.40 +0.7 38,917 - GFF6461 0.40 -0.4 38,917 - GFF6461 0.40 -0.8 38,917 - GFF6461 0.40 -0.2 38,917 - GFF6461 0.40 -1.5 38,917 - GFF6461 0.40 -2.0 38,917 - GFF6461 0.40 -1.6 38,917 - GFF6461 0.40 +0.4 38,917 - GFF6461 0.40 -2.5 38,943 + GFF6461 0.46 -1.3 39,066 + GFF6461 0.75 -0.6 39,066 + GFF6461 0.75 -2.7 39,066 + GFF6461 0.75 -0.4 39,067 - GFF6461 0.76 -0.1 39,067 - GFF6461 0.76 +0.3 39,067 - GFF6461 0.76 +3.0 39,132 + -0.8 39,133 - -1.6 39,133 - -1.3 39,266 + GFF6462 0.11 +0.2 39,266 + GFF6462 0.11 +0.2 39,266 + GFF6462 0.11 +0.4 39,266 + GFF6462 0.11 -2.2 39,266 + GFF6462 0.11 -3.1 39,267 - GFF6462 0.11 +1.2 39,267 - GFF6462 0.11 +1.6 39,563 + GFF6462 0.44 +0.3 39,564 - GFF6462 0.44 +0.5 39,564 - GFF6462 0.44 -0.8 39,564 - GFF6462 0.44 +1.7 39,564 - GFF6462 0.44 -0.1 39,833 + GFF6462 0.74 +0.4 39,833 + GFF6462 0.74 +1.0 39,833 + GFF6462 0.74 +0.1 39,834 - GFF6462 0.74 -1.6 39,834 - GFF6462 0.74 +0.1 39,834 - GFF6462 0.74 -1.8 39,836 + GFF6462 0.74 -0.4 39,837 - GFF6462 0.75 +0.2 40,264 + GFF6463 0.24 -0.3 40,264 + GFF6463 0.24 -0.6 40,360 + GFF6463 0.36 -0.8 40,360 + GFF6463 0.36 -0.9 40,361 - GFF6463 0.36 +0.1 40,361 - GFF6463 0.36 -1.3 40,361 - GFF6463 0.36 -0.5 40,361 - GFF6463 0.36 -1.3 40,361 - GFF6463 0.36 +1.1 40,361 - GFF6463 0.36 -1.3 40,407 - GFF6463 0.42 -0.6 40,407 - GFF6463 0.42 -0.8 40,429 + GFF6463 0.45 -1.0 40,429 + GFF6463 0.45 -0.2 40,429 + GFF6463 0.45 -1.6 40,429 + GFF6463 0.45 +0.4 40,429 + GFF6463 0.45 -0.6 40,429 + GFF6463 0.45 -2.3 40,430 - GFF6463 0.45 -0.1 40,430 - GFF6463 0.45 -1.0 40,430 - GFF6463 0.45 -0.3 40,430 - GFF6463 0.45 -0.9 40,430 - GFF6463 0.45 -1.3 40,430 - GFF6463 0.45 +0.3 40,430 - GFF6463 0.45 +0.6 40,430 - GFF6463 0.45 -2.0 40,525 + GFF6463 0.57 -1.0 40,526 - GFF6463 0.57 +2.3 40,526 - GFF6463 0.57 -2.9 40,526 - GFF6463 0.57 -1.3 40,852 + -0.7 40,852 + +1.5 40,852 + +0.0 40,852 + -0.4 40,852 + -0.0 40,852 + -0.3 40,852 + -0.7 40,852 + +0.8 40,852 + -0.6 40,852 + +0.0 40,852 + +1.0 40,853 - +0.4 40,853 - -1.9 40,853 - +0.4 40,853 - -1.9 40,853 - -0.9 40,940 + +0.9
Or see this region's nucleotide sequence