Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6405 and GFF6406 are separated by 49 nucleotides GFF6406 and GFF6407 are separated by 53 nucleotides GFF6407 and GFF6408 overlap by 1 nucleotides
GFF6405 - ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines), at 79,384 to 80,136
GFF6405
GFF6406 - Transcriptional regulator, IclR family, at 80,186 to 80,992
GFF6406
GFF6407 - Phytanoyl-CoA dioxygenase, at 81,046 to 81,891
GFF6407
GFF6408 - Urocanate hydratase (EC 4.2.1.49), at 81,891 to 83,618
GFF6408
Position (kb) 81
82 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 80.188 kb on - strand at 80.731 kb on - strand, within GFF6406 at 80.966 kb on + strand at 80.966 kb on + strand at 80.967 kb on - strand at 80.967 kb on - strand at 80.967 kb on - strand at 80.967 kb on - strand at 80.967 kb on - strand at 80.967 kb on - strand at 81.018 kb on - strand at 81.036 kb on + strand at 81.036 kb on + strand at 81.036 kb on + strand at 81.036 kb on + strand at 81.037 kb on - strand at 81.037 kb on - strand at 81.037 kb on - strand at 81.037 kb on - strand at 81.037 kb on - strand at 81.048 kb on - strand at 81.368 kb on + strand, within GFF6407 at 81.488 kb on + strand, within GFF6407 at 81.488 kb on + strand, within GFF6407 at 81.488 kb on + strand, within GFF6407 at 81.488 kb on + strand, within GFF6407 at 81.488 kb on + strand, within GFF6407 at 81.488 kb on + strand, within GFF6407 at 81.489 kb on - strand, within GFF6407 at 81.489 kb on - strand, within GFF6407 at 81.489 kb on - strand, within GFF6407 at 81.489 kb on - strand, within GFF6407 at 81.489 kb on - strand, within GFF6407 at 81.489 kb on - strand, within GFF6407 at 81.489 kb on - strand, within GFF6407 at 81.489 kb on - strand, within GFF6407 at 81.489 kb on - strand, within GFF6407 at 81.491 kb on + strand, within GFF6407 at 81.491 kb on + strand, within GFF6407 at 81.491 kb on + strand, within GFF6407 at 81.492 kb on - strand, within GFF6407 at 81.492 kb on - strand, within GFF6407 at 81.492 kb on - strand, within GFF6407 at 81.492 kb on - strand, within GFF6407 at 81.560 kb on + strand, within GFF6407 at 81.560 kb on + strand, within GFF6407 at 81.561 kb on - strand, within GFF6407 at 82.070 kb on - strand, within GFF6408 at 82.070 kb on - strand, within GFF6408 at 82.070 kb on - strand, within GFF6408 at 82.070 kb on - strand, within GFF6408 at 82.070 kb on - strand, within GFF6408 at 82.070 kb on - strand, within GFF6408 at 82.441 kb on + strand, within GFF6408 at 82.441 kb on + strand, within GFF6408 at 82.441 kb on + strand, within GFF6408 at 82.441 kb on + strand, within GFF6408 at 82.441 kb on + strand, within GFF6408 at 82.441 kb on + strand, within GFF6408 at 82.442 kb on - strand, within GFF6408 at 82.442 kb on - strand, within GFF6408 at 82.442 kb on - strand, within GFF6408 at 82.442 kb on - strand, within GFF6408 at 82.442 kb on - strand, within GFF6408 at 82.442 kb on - strand, within GFF6408 at 82.516 kb on + strand, within GFF6408 at 82.516 kb on + strand, within GFF6408 at 82.516 kb on + strand, within GFF6408 at 82.517 kb on - strand, within GFF6408 at 82.517 kb on - strand, within GFF6408 at 82.517 kb on - strand, within GFF6408 at 82.517 kb on - strand, within GFF6408 at 82.517 kb on - strand, within GFF6408 at 82.517 kb on - strand, within GFF6408 at 82.747 kb on + strand, within GFF6408 at 82.748 kb on - strand, within GFF6408
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 80,188 - -3.3 80,731 - GFF6406 0.68 -2.4 80,966 + -0.6 80,966 + -0.8 80,967 - -0.3 80,967 - +0.2 80,967 - +0.1 80,967 - -1.5 80,967 - -0.2 80,967 - -1.6 81,018 - +1.0 81,036 + +0.9 81,036 + -0.6 81,036 + -0.5 81,036 + +0.7 81,037 - -0.0 81,037 - -1.9 81,037 - +0.1 81,037 - +1.8 81,037 - -1.2 81,048 - -2.1 81,368 + GFF6407 0.38 +1.1 81,488 + GFF6407 0.52 +1.6 81,488 + GFF6407 0.52 -0.1 81,488 + GFF6407 0.52 +1.0 81,488 + GFF6407 0.52 +0.8 81,488 + GFF6407 0.52 +1.9 81,488 + GFF6407 0.52 -0.6 81,489 - GFF6407 0.52 -0.0 81,489 - GFF6407 0.52 -0.9 81,489 - GFF6407 0.52 -1.9 81,489 - GFF6407 0.52 -1.1 81,489 - GFF6407 0.52 +0.2 81,489 - GFF6407 0.52 +0.2 81,489 - GFF6407 0.52 +0.2 81,489 - GFF6407 0.52 -1.9 81,489 - GFF6407 0.52 +0.6 81,491 + GFF6407 0.53 +0.3 81,491 + GFF6407 0.53 +0.9 81,491 + GFF6407 0.53 -0.0 81,492 - GFF6407 0.53 -2.1 81,492 - GFF6407 0.53 -0.4 81,492 - GFF6407 0.53 +0.7 81,492 - GFF6407 0.53 -1.2 81,560 + GFF6407 0.61 -1.4 81,560 + GFF6407 0.61 +0.9 81,561 - GFF6407 0.61 -0.9 82,070 - GFF6408 0.10 +2.3 82,070 - GFF6408 0.10 +1.6 82,070 - GFF6408 0.10 -1.3 82,070 - GFF6408 0.10 +1.3 82,070 - GFF6408 0.10 -0.0 82,070 - GFF6408 0.10 -0.4 82,441 + GFF6408 0.32 -1.8 82,441 + GFF6408 0.32 +2.4 82,441 + GFF6408 0.32 -0.7 82,441 + GFF6408 0.32 -1.1 82,441 + GFF6408 0.32 +1.0 82,441 + GFF6408 0.32 -2.0 82,442 - GFF6408 0.32 +0.2 82,442 - GFF6408 0.32 -1.0 82,442 - GFF6408 0.32 +0.9 82,442 - GFF6408 0.32 -1.6 82,442 - GFF6408 0.32 -0.6 82,442 - GFF6408 0.32 -0.2 82,516 + GFF6408 0.36 -2.2 82,516 + GFF6408 0.36 -1.8 82,516 + GFF6408 0.36 -0.9 82,517 - GFF6408 0.36 +0.1 82,517 - GFF6408 0.36 +0.7 82,517 - GFF6408 0.36 -1.4 82,517 - GFF6408 0.36 -1.3 82,517 - GFF6408 0.36 -0.9 82,517 - GFF6408 0.36 -1.7 82,747 + GFF6408 0.50 -1.3 82,748 - GFF6408 0.50 -2.2
Or see this region's nucleotide sequence