Strain Fitness in Variovorax sp. SCN45 around GFF6403

Experiment: Community=guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=guar; Passage=4
77,091	+		GFF6402	0.29	+2.3
77,091	+		GFF6402	0.29	+1.3
77,091	+		GFF6402	0.29	-0.8
77,091	+		GFF6402	0.29	-0.8
77,091	+		GFF6402	0.29	-0.8
77,091	+		GFF6402	0.29	+1.9
77,091	+		GFF6402	0.29	-1.2
77,092	-		GFF6402	0.29	-1.1
77,092	-		GFF6402	0.29	-0.2
77,092	-		GFF6402	0.29	-0.4
77,092	-		GFF6402	0.29	-1.8
77,092	-		GFF6402	0.29	+0.6
77,092	-		GFF6402	0.29	+0.8
77,092	-		GFF6402	0.29	+0.7
77,092	-		GFF6402	0.29	+2.6
77,092	-		GFF6402	0.29	+2.6
77,094	+		GFF6402	0.29	-0.9
77,095	-		GFF6402	0.30	-0.8
77,095	-		GFF6402	0.30	+1.6
77,095	-		GFF6402	0.30	+0.1
77,194	-		GFF6402	0.38	+0.4
77,397	+		GFF6402	0.54	+1.6
77,397	+		GFF6402	0.54	+0.0
77,397	+		GFF6402	0.54	-0.0
77,398	-		GFF6402	0.54	+1.0
77,398	-		GFF6402	0.54	+2.1
77,398	-		GFF6402	0.54	-0.1
77,398	-		GFF6402	0.54	+0.5
77,398	-		GFF6402	0.54	-0.5
77,398	-		GFF6402	0.54	-0.6
77,398	-		GFF6402	0.54	-0.9
77,398	-		GFF6402	0.54	-2.8
77,472	+		GFF6402	0.60	-2.1
77,561	+		GFF6402	0.67	-0.6
77,561	+		GFF6402	0.67	+0.5
77,562	-		GFF6402	0.68	+1.3
77,562	-		GFF6402	0.68	-2.9
77,562	-		GFF6402	0.68	+3.0
77,562	-		GFF6402	0.68	+1.8
77,562	-		GFF6402	0.68	-0.0
77,562	-		GFF6402	0.68	+0.2
77,562	-		GFF6402	0.68	+1.9
77,562	-		GFF6402	0.68	-1.1
77,685	+		GFF6402	0.78	+0.7
77,685	+		GFF6402	0.78	-1.9
77,685	+		GFF6402	0.78	-1.6
77,686	-		GFF6402	0.78	-0.8
77,736	+		GFF6402	0.82	+0.7
77,737	-		GFF6402	0.82	+0.2
77,737	-		GFF6402	0.82	+1.4
78,299	+		GFF6403	0.54	+0.1
78,299	+		GFF6403	0.54	+0.2
78,694	+				+0.5
78,694	+				-1.8
78,694	+				+1.7
78,694	+				-1.4
78,694	+				+1.0
78,694	+				+0.6
78,694	+				-1.4
78,695	-				-0.9
78,695	-				-0.3
78,695	-				-0.6
78,787	+		GFF6404	0.12	+1.3
78,787	+		GFF6404	0.12	+1.6
78,787	+		GFF6404	0.12	-3.0
78,787	+		GFF6404	0.12	-1.0
78,787	+		GFF6404	0.12	+1.0
78,788	-		GFF6404	0.12	-1.7
78,788	-		GFF6404	0.12	+0.6
78,788	-		GFF6404	0.12	-0.9
78,788	-		GFF6404	0.12	+0.2
78,808	+		GFF6404	0.15	-0.9
78,808	+		GFF6404	0.15	-2.3
78,808	+		GFF6404	0.15	+0.6
78,809	-		GFF6404	0.15	-0.1
78,809	-		GFF6404	0.15	+2.0
78,809	-		GFF6404	0.15	+1.5
78,809	-		GFF6404	0.15	+1.0
78,809	-		GFF6404	0.15	-2.5
78,927	+		GFF6404	0.33	+0.6
79,069	+		GFF6404	0.54	+1.0
79,069	+		GFF6404	0.54	-2.3
79,069	+		GFF6404	0.54	-0.3
79,069	+		GFF6404	0.54	-0.8
79,070	-		GFF6404	0.54	+1.3
79,070	-		GFF6404	0.54	-0.3
79,070	-		GFF6404	0.54	-0.7
79,070	-		GFF6404	0.54	-0.4
79,070	-		GFF6404	0.54	-2.3
79,081	+		GFF6404	0.56	+0.0
79,201	+		GFF6404	0.74	-0.5
79,201	+		GFF6404	0.74	+0.2
79,201	+		GFF6404	0.74	-1.2
79,202	-		GFF6404	0.74	-0.6
79,219	+		GFF6404	0.76	-0.9
79,219	+		GFF6404	0.76	-1.5
79,219	+		GFF6404	0.76	+1.0
79,220	-		GFF6404	0.77	-0.6
79,385	+				-2.8
79,385	+				+0.2
79,385	+				-1.7
79,385	+				-1.5
79,385	+				-0.9
79,385	+				+0.2
79,385	+				-0.2
79,386	-				+1.6
79,386	-				-0.0
79,386	-				-2.4
79,386	-				-0.5
79,386	-				-2.0
79,386	-				+1.0
79,386	-				+0.6
79,386	-				+0.2
79,386	-				+1.1
79,386	-				+0.2
79,386	-				-0.4
79,386	-				-0.8
79,427	+				-1.4
79,427	+				+3.9
79,427	+				-0.4
79,427	+				+0.8
79,427	+				+0.1
79,428	-				+1.6
79,428	-				-1.2
79,428	-				+0.6
79,428	-				+1.8
79,428	-				+0.2
79,428	-				+1.3
79,511	+		GFF6405	0.17	+0.8
79,511	+		GFF6405	0.17	-0.4
79,511	+		GFF6405	0.17	-0.5
79,512	-		GFF6405	0.17	+2.8