Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF638 and GFF639 are separated by 118 nucleotides GFF639 and GFF640 are separated by 7 nucleotides GFF640 and GFF641 are separated by 112 nucleotides GFF641 and GFF642 are separated by 173 nucleotides
GFF638 - Two-component transcriptional response regulator, LuxR family, at 690,171 to 691,043
GFF638
GFF639 - hypothetical protein, at 691,162 to 691,932
GFF639
GFF640 - no description, at 691,940 to 692,419
GFF640
GFF641 - no description, at 692,532 to 693,050
GFF641
GFF642 - Membrane protease family protein BA0301, at 693,224 to 694,120
GFF642
Position (kb) 691
692
693 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 691.082 kb on - strand at 691.105 kb on - strand at 691.105 kb on - strand at 691.105 kb on - strand at 691.105 kb on - strand at 691.106 kb on + strand at 691.204 kb on + strand at 691.204 kb on + strand at 691.204 kb on + strand at 691.205 kb on - strand at 691.205 kb on - strand at 691.310 kb on - strand, within GFF639 at 691.336 kb on + strand, within GFF639 at 691.336 kb on + strand, within GFF639 at 691.337 kb on - strand, within GFF639 at 691.337 kb on - strand, within GFF639 at 691.351 kb on + strand, within GFF639 at 691.351 kb on + strand, within GFF639 at 691.352 kb on - strand, within GFF639 at 691.447 kb on + strand, within GFF639 at 691.447 kb on + strand, within GFF639 at 691.447 kb on + strand, within GFF639 at 691.447 kb on + strand, within GFF639 at 691.450 kb on + strand, within GFF639 at 691.615 kb on + strand, within GFF639 at 691.615 kb on + strand, within GFF639 at 691.615 kb on + strand, within GFF639 at 691.615 kb on + strand, within GFF639 at 691.615 kb on + strand, within GFF639 at 691.615 kb on + strand, within GFF639 at 691.616 kb on - strand, within GFF639 at 691.616 kb on - strand, within GFF639 at 691.616 kb on - strand, within GFF639 at 691.616 kb on - strand, within GFF639 at 691.636 kb on + strand, within GFF639 at 691.636 kb on + strand, within GFF639 at 691.636 kb on + strand, within GFF639 at 691.637 kb on - strand, within GFF639 at 691.637 kb on - strand, within GFF639 at 691.735 kb on + strand, within GFF639 at 691.735 kb on + strand, within GFF639 at 691.736 kb on - strand, within GFF639 at 691.736 kb on - strand, within GFF639 at 691.736 kb on - strand, within GFF639 at 691.736 kb on - strand, within GFF639 at 691.786 kb on + strand, within GFF639 at 691.897 kb on + strand at 691.898 kb on - strand at 691.898 kb on - strand at 691.900 kb on + strand at 691.900 kb on + strand at 692.005 kb on - strand, within GFF640 at 692.005 kb on - strand, within GFF640 at 692.221 kb on - strand, within GFF640 at 692.221 kb on - strand, within GFF640 at 692.518 kb on - strand at 692.518 kb on - strand at 692.534 kb on - strand at 692.860 kb on + strand, within GFF641 at 693.043 kb on - strand at 693.043 kb on - strand at 693.043 kb on - strand at 693.099 kb on - strand at 693.099 kb on - strand at 693.275 kb on + strand at 693.275 kb on + strand at 693.276 kb on - strand at 693.294 kb on - strand at 693.419 kb on + strand, within GFF642 at 693.419 kb on + strand, within GFF642 at 693.419 kb on + strand, within GFF642 at 693.419 kb on + strand, within GFF642 at 693.419 kb on + strand, within GFF642 at 693.419 kb on + strand, within GFF642
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 691,082 - +1.1 691,105 - -2.8 691,105 - -0.4 691,105 - -1.7 691,105 - -1.3 691,106 + -0.7 691,204 + -0.7 691,204 + -0.6 691,204 + -1.0 691,205 - +0.8 691,205 - +0.2 691,310 - GFF639 0.19 -1.4 691,336 + GFF639 0.23 -0.2 691,336 + GFF639 0.23 +1.8 691,337 - GFF639 0.23 -1.3 691,337 - GFF639 0.23 -0.5 691,351 + GFF639 0.25 +0.8 691,351 + GFF639 0.25 -1.7 691,352 - GFF639 0.25 -0.2 691,447 + GFF639 0.37 -0.2 691,447 + GFF639 0.37 -0.6 691,447 + GFF639 0.37 -2.2 691,447 + GFF639 0.37 +0.4 691,450 + GFF639 0.37 +0.2 691,615 + GFF639 0.59 +1.5 691,615 + GFF639 0.59 -1.1 691,615 + GFF639 0.59 -2.2 691,615 + GFF639 0.59 -0.8 691,615 + GFF639 0.59 -2.1 691,615 + GFF639 0.59 +1.6 691,616 - GFF639 0.59 -2.2 691,616 - GFF639 0.59 +0.8 691,616 - GFF639 0.59 +1.4 691,616 - GFF639 0.59 -0.2 691,636 + GFF639 0.61 +0.9 691,636 + GFF639 0.61 -0.8 691,636 + GFF639 0.61 -0.6 691,637 - GFF639 0.62 -1.6 691,637 - GFF639 0.62 +1.8 691,735 + GFF639 0.74 -1.2 691,735 + GFF639 0.74 +1.0 691,736 - GFF639 0.74 +2.6 691,736 - GFF639 0.74 +0.5 691,736 - GFF639 0.74 -0.4 691,736 - GFF639 0.74 +0.4 691,786 + GFF639 0.81 +0.1 691,897 + -1.1 691,898 - +1.3 691,898 - -0.5 691,900 + +0.8 691,900 + -0.8 692,005 - GFF640 0.14 +0.0 692,005 - GFF640 0.14 -3.6 692,221 - GFF640 0.59 -0.4 692,221 - GFF640 0.59 -1.7 692,518 - -0.2 692,518 - +0.6 692,534 - -2.3 692,860 + GFF641 0.63 -1.6 693,043 - -1.6 693,043 - -1.9 693,043 - +0.1 693,099 - -0.8 693,099 - -0.4 693,275 + -0.3 693,275 + +1.6 693,276 - +0.1 693,294 - +0.9 693,419 + GFF642 0.22 +0.0 693,419 + GFF642 0.22 +0.7 693,419 + GFF642 0.22 -0.7 693,419 + GFF642 0.22 +1.1 693,419 + GFF642 0.22 -1.6 693,419 + GFF642 0.22 +1.0
Or see this region's nucleotide sequence