Strain Fitness in Variovorax sp. SCN45 around GFF6345

Experiment: Community=guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=guar; Passage=4
7,960	+		GFF6344	0.53	-2.0
7,960	+		GFF6344	0.53	-0.1
8,089	+		GFF6344	0.62	+0.5
8,090	-		GFF6344	0.62	-1.5
8,090	-		GFF6344	0.62	+0.0
8,090	-		GFF6344	0.62	-0.8
8,140	+		GFF6344	0.66	+0.9
8,141	-		GFF6344	0.66	+2.7
8,141	-		GFF6344	0.66	+0.8
8,234	+		GFF6344	0.73	-0.9
8,234	+		GFF6344	0.73	+0.6
8,235	-		GFF6344	0.73	+0.6
8,235	-		GFF6344	0.73	+0.7
8,382	+		GFF6344	0.84	+1.9
8,382	+		GFF6344	0.84	+0.2
8,416	+		GFF6344	0.86	-0.7
8,506	-				+0.5
8,506	-				-0.4
8,605	+				-1.7
8,605	+				-0.7
8,606	-				+1.1
8,606	-				-0.2
8,638	-				+1.1
8,638	-				-1.1
8,638	-				-0.1
8,638	-				-2.7
8,638	-				-1.4
8,656	-				+1.6
8,713	+				+1.0
8,713	+				-0.0
8,713	+				-1.5
8,713	+				-2.5
8,714	-				+0.1
8,714	-				+0.7
8,714	-				-2.5
8,917	+		GFF6345	0.69	+1.5
8,917	+		GFF6345	0.69	+0.3
8,917	+		GFF6345	0.69	-0.5
8,918	-		GFF6345	0.69	-0.3
8,918	-		GFF6345	0.69	-0.2
8,918	-		GFF6345	0.69	+1.0
8,962	+		GFF6345	0.82	+0.2
9,019	+				+0.8
9,019	+				-1.5
9,019	+				-1.9
9,019	+				-1.2
9,020	-				+0.6
9,020	-				-2.0
9,028	+				+1.0
9,029	-				+0.2
9,029	-				-1.2
9,029	-				-1.8
9,075	+				-1.5
9,075	+				-1.4
9,075	+				-1.5
9,075	+				-1.0
9,076	-				+0.1
9,076	-				-0.4
9,076	-				-1.4
9,076	-				-0.0
9,076	-				-0.8
9,235	+				-0.7
9,236	-				-0.0
9,242	+				-0.3
9,242	+				+1.1
9,242	+				+1.5
9,243	-				-2.4
9,243	-				+0.2
9,265	+				+1.0
9,265	+				+0.1
9,265	+				-0.8
9,266	-				+0.2
9,471	-				+2.3
9,471	-				+0.5
9,484	+				+1.0
9,485	-				+0.8
9,494	+				+0.5
9,495	-				+0.2
9,857	+		GFF6347	0.23	-1.3
9,858	-		GFF6347	0.23	-2.1