Strain Fitness in Variovorax sp. SCN45 around GFF633

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF631 and GFF632 are separated by 24 nucleotidesGFF632 and GFF633 are separated by 1 nucleotidesGFF633 and GFF634 are separated by 21 nucleotides GFF631 - Formamidase (EC 3.5.1.49), at 680,271 to 681,503 GFF631 GFF632 - Urea ABC transporter, ATPase protein UrtE, at 681,528 to 682,229 GFF632 GFF633 - Urea ABC transporter, ATPase protein UrtD, at 682,231 to 682,974 GFF633 GFF634 - Urea ABC transporter, permease protein UrtC, at 682,996 to 684,186 GFF634 Position (kb) 682 683Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 681.541 kb on + strandat 681.979 kb on + strand, within GFF632at 681.979 kb on + strand, within GFF632at 682.678 kb on + strand, within GFF633at 682.679 kb on - strand, within GFF633at 683.582 kb on + strand, within GFF634at 683.583 kb on - strand, within GFF634at 683.592 kb on - strand, within GFF634at 683.592 kb on - strand, within GFF634at 683.666 kb on + strand, within GFF634at 683.732 kb on + strand, within GFF634at 683.732 kb on + strand, within GFF634at 683.733 kb on - strand, within GFF634

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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681,541 + -0.1
681,979 + GFF632 0.64 -0.7
681,979 + GFF632 0.64 -3.9
682,678 + GFF633 0.60 -3.8
682,679 - GFF633 0.60 -0.4
683,582 + GFF634 0.49 -0.0
683,583 - GFF634 0.49 -0.6
683,592 - GFF634 0.50 +1.6
683,592 - GFF634 0.50 -1.5
683,666 + GFF634 0.56 -0.1
683,732 + GFF634 0.62 -1.9
683,732 + GFF634 0.62 -0.3
683,733 - GFF634 0.62 -0.5

Or see this region's nucleotide sequence