Strain Fitness in Variovorax sp. SCN45 around GFF6227

Experiment: Community=guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=guar; Passage=4
8,434	+		GFF6226	0.25	-0.6
8,434	+		GFF6226	0.25	+0.2
8,434	+		GFF6226	0.25	-0.0
8,435	-		GFF6226	0.25	+2.4
8,435	-		GFF6226	0.25	-2.0
8,435	-		GFF6226	0.25	-0.4
8,435	-		GFF6226	0.25	-0.4
8,435	-		GFF6226	0.25	-1.1
8,435	-		GFF6226	0.25	-1.4
8,435	-		GFF6226	0.25	-0.8
8,435	-		GFF6226	0.25	+0.0
8,980	+		GFF6226	0.81	-2.0
8,981	-		GFF6226	0.81	-0.4
9,203	+				-2.4
9,203	+				-0.9
9,204	-				+0.3
9,204	-				-1.0
9,291	+				-0.9
9,291	+				+1.1
9,291	+				-1.4
9,291	+				-1.7
9,292	-				-0.1
9,292	-				-1.4
9,355	+				-0.9
9,356	-				+0.1
9,645	+		GFF6227	0.14	+0.7
9,645	+		GFF6227	0.14	-1.2
9,645	+		GFF6227	0.14	+2.1
9,645	+		GFF6227	0.14	+0.7
9,646	-		GFF6227	0.14	-1.3
10,473	+		GFF6227	0.57	-2.0
10,474	-		GFF6227	0.57	-0.8
10,474	-		GFF6227	0.57	-0.0
10,474	-		GFF6227	0.57	+0.6
10,647	+		GFF6227	0.67	+0.8
10,647	+		GFF6227	0.67	-1.5
10,647	+		GFF6227	0.67	-0.5
10,648	-		GFF6227	0.67	-1.6
11,196	+				+1.2
11,197	-				-1.0
11,197	-				-1.5
11,197	-				-1.4
11,197	-				-0.3
11,197	-				-1.3
11,197	-				-1.5
11,197	-				-0.6
11,299	+				+0.4
11,300	-				-1.6
11,300	-				-1.6
11,300	-				+0.8
11,300	-				-2.8
11,300	-				+1.4
11,300	-				-2.8
11,326	-				-0.3
11,326	-				+1.6
11,326	-				-0.5
11,326	-				-1.9
11,388	+				+0.7
11,388	+				+0.1
11,388	+				-0.6
11,388	+				+0.3
11,388	+				+0.0
11,388	+				-3.2
11,388	+				-2.7
11,388	+				-0.1
11,389	-				+0.2
11,389	-				+0.9
11,389	-				+1.4
11,389	-				-0.7
11,389	-				+0.1
11,426	+				+1.4
11,427	+				+0.6
11,427	+				-1.0
11,427	+				-0.0
11,427	+				+2.4
11,428	-				+1.4
11,428	-				-0.5
12,163	+		GFF6228	0.63	-0.9