Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6155 and GFF6156 are separated by 40 nucleotides GFF6156 and GFF6157 are separated by 150 nucleotides GFF6157 and GFF6158 are separated by 16 nucleotides
GFF6155 - Aerobic carbon monoxide dehydrogenase (quinone), large chain (EC 1.2.5.3), at 59,718 to 62,108
GFF6155
GFF6156 - Aerobic carbon monoxide dehydrogenase (quinone), medium chain (EC 1.2.5.3), at 62,149 to 62,943
GFF6156
GFF6157 - Carbon monoxide oxidation accessory protein CoxD, at 63,094 to 63,996
GFF6157
GFF6158 - carbon monoxide dehydrogenase E protein, at 64,013 to 65,227
GFF6158
Position (kb) 63
64 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 62.152 kb on + strand at 62.152 kb on + strand at 62.152 kb on + strand at 62.152 kb on + strand at 62.152 kb on + strand at 62.152 kb on + strand at 62.152 kb on + strand at 62.152 kb on + strand at 62.153 kb on - strand at 62.153 kb on - strand at 62.153 kb on - strand at 62.153 kb on - strand at 62.153 kb on - strand at 62.153 kb on - strand at 62.153 kb on - strand at 62.153 kb on - strand at 62.153 kb on - strand at 62.153 kb on - strand at 62.153 kb on - strand at 62.153 kb on - strand at 62.544 kb on + strand, within GFF6156 at 62.544 kb on + strand, within GFF6156 at 62.544 kb on + strand, within GFF6156 at 62.545 kb on - strand, within GFF6156 at 62.659 kb on + strand, within GFF6156 at 62.941 kb on + strand at 62.941 kb on + strand at 62.941 kb on + strand at 63.145 kb on + strand at 63.145 kb on + strand at 63.298 kb on + strand, within GFF6157 at 63.298 kb on + strand, within GFF6157 at 63.298 kb on + strand, within GFF6157 at 63.299 kb on - strand, within GFF6157 at 63.329 kb on - strand, within GFF6157 at 63.329 kb on - strand, within GFF6157 at 63.340 kb on + strand, within GFF6157 at 63.341 kb on - strand, within GFF6157 at 63.341 kb on - strand, within GFF6157 at 63.341 kb on - strand, within GFF6157 at 63.413 kb on - strand, within GFF6157 at 63.424 kb on + strand, within GFF6157 at 63.425 kb on - strand, within GFF6157 at 63.425 kb on - strand, within GFF6157 at 63.425 kb on - strand, within GFF6157 at 63.539 kb on - strand, within GFF6157 at 63.539 kb on - strand, within GFF6157 at 63.539 kb on - strand, within GFF6157 at 63.550 kb on + strand, within GFF6157 at 63.551 kb on - strand, within GFF6157 at 63.551 kb on - strand, within GFF6157 at 63.664 kb on + strand, within GFF6157 at 63.664 kb on + strand, within GFF6157 at 63.664 kb on + strand, within GFF6157 at 63.665 kb on - strand, within GFF6157 at 63.680 kb on - strand, within GFF6157 at 64.650 kb on + strand, within GFF6158 at 64.651 kb on - strand, within GFF6158 at 64.651 kb on - strand, within GFF6158 at 64.733 kb on + strand, within GFF6158 at 64.734 kb on - strand, within GFF6158
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 62,152 + +1.6 62,152 + +0.3 62,152 + -1.4 62,152 + +0.9 62,152 + -1.2 62,152 + -0.0 62,152 + +0.4 62,152 + -2.9 62,153 - +0.1 62,153 - -0.1 62,153 - -0.2 62,153 - +0.6 62,153 - +0.4 62,153 - +1.1 62,153 - -0.6 62,153 - -1.6 62,153 - -1.4 62,153 - +0.5 62,153 - +0.4 62,153 - +0.5 62,544 + GFF6156 0.50 +0.1 62,544 + GFF6156 0.50 -0.5 62,544 + GFF6156 0.50 -0.9 62,545 - GFF6156 0.50 -1.6 62,659 + GFF6156 0.64 +2.0 62,941 + +0.0 62,941 + -0.5 62,941 + -1.5 63,145 + +0.1 63,145 + +0.0 63,298 + GFF6157 0.23 +0.8 63,298 + GFF6157 0.23 -1.6 63,298 + GFF6157 0.23 +0.4 63,299 - GFF6157 0.23 -1.0 63,329 - GFF6157 0.26 +0.1 63,329 - GFF6157 0.26 -1.2 63,340 + GFF6157 0.27 +1.7 63,341 - GFF6157 0.27 -0.5 63,341 - GFF6157 0.27 -2.2 63,341 - GFF6157 0.27 -2.2 63,413 - GFF6157 0.35 +0.7 63,424 + GFF6157 0.37 +1.7 63,425 - GFF6157 0.37 +0.5 63,425 - GFF6157 0.37 +0.7 63,425 - GFF6157 0.37 +0.1 63,539 - GFF6157 0.49 -1.2 63,539 - GFF6157 0.49 +0.1 63,539 - GFF6157 0.49 +0.7 63,550 + GFF6157 0.50 +0.6 63,551 - GFF6157 0.51 -1.0 63,551 - GFF6157 0.51 -0.6 63,664 + GFF6157 0.63 -0.1 63,664 + GFF6157 0.63 -0.4 63,664 + GFF6157 0.63 -0.4 63,665 - GFF6157 0.63 +1.9 63,680 - GFF6157 0.65 +2.1 64,650 + GFF6158 0.52 +0.8 64,651 - GFF6158 0.53 +1.0 64,651 - GFF6158 0.53 -4.1 64,733 + GFF6158 0.59 +0.1 64,734 - GFF6158 0.59 -0.7
Or see this region's nucleotide sequence