Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6144 and GFF6145 are separated by 155 nucleotides GFF6145 and GFF6146 are separated by 1 nucleotides
GFF6144 - 2-aminoethylphosphonate ABC transporter substrate-binding protein, at 48,335 to 49,375
GFF6144
GFF6145 - 2-aminoethylphosphonate utilization transcriptional regulator, GntR family, at 49,531 to 50,259
GFF6145
GFF6146 - Phosphonoacetate hydrolase (EC 3.11.1.2), at 50,261 to 51,487
GFF6146
Position (kb) 49
50
51 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 48.750 kb on + strand, within GFF6144 at 48.751 kb on - strand, within GFF6144 at 48.751 kb on - strand, within GFF6144 at 48.783 kb on + strand, within GFF6144 at 48.783 kb on + strand, within GFF6144 at 48.783 kb on + strand, within GFF6144 at 48.784 kb on - strand, within GFF6144 at 48.784 kb on - strand, within GFF6144 at 48.784 kb on - strand, within GFF6144 at 48.784 kb on - strand, within GFF6144 at 48.837 kb on + strand, within GFF6144 at 48.838 kb on - strand, within GFF6144 at 48.885 kb on + strand, within GFF6144 at 48.885 kb on + strand, within GFF6144 at 48.885 kb on + strand, within GFF6144 at 48.885 kb on + strand, within GFF6144 at 48.886 kb on - strand, within GFF6144 at 49.020 kb on + strand, within GFF6144 at 49.020 kb on + strand, within GFF6144 at 49.020 kb on + strand, within GFF6144 at 49.057 kb on - strand, within GFF6144 at 49.233 kb on + strand, within GFF6144 at 49.234 kb on - strand, within GFF6144 at 49.266 kb on + strand, within GFF6144 at 49.266 kb on + strand, within GFF6144 at 49.267 kb on - strand, within GFF6144 at 49.524 kb on - strand at 49.524 kb on - strand at 49.524 kb on - strand at 49.804 kb on + strand, within GFF6145 at 49.805 kb on - strand, within GFF6145 at 49.939 kb on + strand, within GFF6145 at 49.939 kb on + strand, within GFF6145 at 49.940 kb on - strand, within GFF6145 at 50.011 kb on + strand, within GFF6145 at 50.011 kb on + strand, within GFF6145 at 50.012 kb on - strand, within GFF6145 at 50.012 kb on - strand, within GFF6145 at 50.391 kb on - strand, within GFF6146 at 50.519 kb on + strand, within GFF6146 at 50.519 kb on + strand, within GFF6146 at 50.571 kb on - strand, within GFF6146 at 50.777 kb on + strand, within GFF6146 at 50.777 kb on + strand, within GFF6146 at 50.853 kb on - strand, within GFF6146 at 50.853 kb on - strand, within GFF6146 at 51.035 kb on + strand, within GFF6146 at 51.035 kb on + strand, within GFF6146 at 51.035 kb on + strand, within GFF6146 at 51.063 kb on - strand, within GFF6146 at 51.149 kb on + strand, within GFF6146 at 51.150 kb on - strand, within GFF6146 at 51.150 kb on - strand, within GFF6146
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 48,750 + GFF6144 0.40 +1.3 48,751 - GFF6144 0.40 +1.0 48,751 - GFF6144 0.40 -0.4 48,783 + GFF6144 0.43 +0.4 48,783 + GFF6144 0.43 -1.0 48,783 + GFF6144 0.43 -3.7 48,784 - GFF6144 0.43 +0.3 48,784 - GFF6144 0.43 -0.0 48,784 - GFF6144 0.43 -0.4 48,784 - GFF6144 0.43 -0.5 48,837 + GFF6144 0.48 +0.6 48,838 - GFF6144 0.48 -0.7 48,885 + GFF6144 0.53 -3.2 48,885 + GFF6144 0.53 +1.4 48,885 + GFF6144 0.53 -0.1 48,885 + GFF6144 0.53 -1.6 48,886 - GFF6144 0.53 +0.0 49,020 + GFF6144 0.66 +0.6 49,020 + GFF6144 0.66 +0.2 49,020 + GFF6144 0.66 +2.1 49,057 - GFF6144 0.69 -0.2 49,233 + GFF6144 0.86 -0.6 49,234 - GFF6144 0.86 -0.5 49,266 + GFF6144 0.89 +1.1 49,266 + GFF6144 0.89 -0.4 49,267 - GFF6144 0.90 +1.0 49,524 - -2.5 49,524 - -0.6 49,524 - -1.1 49,804 + GFF6145 0.37 -2.6 49,805 - GFF6145 0.38 -3.5 49,939 + GFF6145 0.56 -1.0 49,939 + GFF6145 0.56 -0.9 49,940 - GFF6145 0.56 -2.9 50,011 + GFF6145 0.66 -1.3 50,011 + GFF6145 0.66 -2.7 50,012 - GFF6145 0.66 -0.7 50,012 - GFF6145 0.66 -1.9 50,391 - GFF6146 0.11 -2.9 50,519 + GFF6146 0.21 +0.0 50,519 + GFF6146 0.21 -2.2 50,571 - GFF6146 0.25 +2.1 50,777 + GFF6146 0.42 +0.7 50,777 + GFF6146 0.42 -1.0 50,853 - GFF6146 0.48 +1.0 50,853 - GFF6146 0.48 -0.1 51,035 + GFF6146 0.63 +0.4 51,035 + GFF6146 0.63 +5.3 51,035 + GFF6146 0.63 +0.6 51,063 - GFF6146 0.65 +0.9 51,149 + GFF6146 0.72 -2.7 51,150 - GFF6146 0.72 -2.4 51,150 - GFF6146 0.72 +0.8
Or see this region's nucleotide sequence