Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6078 and GFF6079 are separated by 163 nucleotides GFF6079 and GFF6080 are separated by 131 nucleotides
GFF6078 - no description, at 140,572 to 141,393
GFF6078
GFF6079 - hypothetical protein, at 141,557 to 141,982
GFF6079
GFF6080 - Putative deoxyribonuclease YjjV, at 142,114 to 142,974
GFF6080
Position (kb) 141
142 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 140.585 kb on + strand at 140.585 kb on + strand at 140.585 kb on + strand at 140.585 kb on + strand at 140.585 kb on + strand at 140.586 kb on - strand at 140.586 kb on - strand at 140.586 kb on - strand at 140.586 kb on - strand at 140.586 kb on - strand at 140.586 kb on - strand at 140.675 kb on + strand, within GFF6078 at 140.718 kb on - strand, within GFF6078 at 140.768 kb on + strand, within GFF6078 at 140.768 kb on + strand, within GFF6078 at 140.768 kb on + strand, within GFF6078 at 140.768 kb on + strand, within GFF6078 at 140.768 kb on + strand, within GFF6078 at 140.768 kb on + strand, within GFF6078 at 140.768 kb on + strand, within GFF6078 at 140.768 kb on + strand, within GFF6078 at 140.768 kb on + strand, within GFF6078 at 140.769 kb on - strand, within GFF6078 at 140.769 kb on - strand, within GFF6078 at 140.769 kb on - strand, within GFF6078 at 140.769 kb on - strand, within GFF6078 at 140.769 kb on - strand, within GFF6078 at 140.769 kb on - strand, within GFF6078 at 140.808 kb on + strand, within GFF6078 at 140.867 kb on + strand, within GFF6078 at 141.048 kb on - strand, within GFF6078 at 141.057 kb on - strand, within GFF6078 at 141.062 kb on + strand, within GFF6078 at 141.062 kb on + strand, within GFF6078 at 141.062 kb on + strand, within GFF6078 at 141.062 kb on + strand, within GFF6078 at 141.062 kb on + strand, within GFF6078 at 141.062 kb on + strand, within GFF6078 at 141.063 kb on - strand, within GFF6078 at 141.063 kb on - strand, within GFF6078 at 141.063 kb on - strand, within GFF6078 at 141.063 kb on - strand, within GFF6078 at 141.063 kb on - strand, within GFF6078 at 141.063 kb on - strand, within GFF6078 at 141.063 kb on - strand, within GFF6078 at 141.063 kb on - strand, within GFF6078 at 141.063 kb on - strand, within GFF6078 at 141.063 kb on - strand, within GFF6078 at 141.155 kb on + strand, within GFF6078 at 141.155 kb on + strand, within GFF6078 at 141.156 kb on - strand, within GFF6078 at 141.275 kb on + strand, within GFF6078 at 141.275 kb on + strand, within GFF6078 at 141.276 kb on - strand, within GFF6078 at 141.276 kb on - strand, within GFF6078 at 141.276 kb on - strand, within GFF6078 at 141.393 kb on + strand at 141.393 kb on + strand at 141.394 kb on - strand at 141.437 kb on + strand at 141.437 kb on + strand at 141.437 kb on + strand at 141.437 kb on + strand at 141.437 kb on + strand at 141.437 kb on + strand at 141.437 kb on + strand at 141.437 kb on + strand at 141.437 kb on + strand at 141.437 kb on + strand at 141.438 kb on - strand at 141.438 kb on - strand at 141.438 kb on - strand at 141.438 kb on - strand at 141.438 kb on - strand at 141.438 kb on - strand at 141.438 kb on - strand at 141.438 kb on - strand at 141.438 kb on - strand at 141.544 kb on + strand at 141.544 kb on + strand at 141.545 kb on - strand at 141.545 kb on - strand at 141.545 kb on - strand at 141.545 kb on - strand at 141.555 kb on - strand at 141.558 kb on + strand at 141.558 kb on + strand at 141.558 kb on + strand at 141.558 kb on + strand at 141.558 kb on + strand at 141.558 kb on + strand at 141.558 kb on + strand at 141.558 kb on + strand at 141.558 kb on + strand at 141.558 kb on + strand at 141.558 kb on + strand at 141.559 kb on - strand at 141.559 kb on - strand at 141.559 kb on - strand at 141.559 kb on - strand at 141.559 kb on - strand at 141.559 kb on - strand at 141.559 kb on - strand at 141.559 kb on - strand at 141.801 kb on + strand, within GFF6079 at 141.801 kb on + strand, within GFF6079 at 141.801 kb on + strand, within GFF6079 at 141.802 kb on - strand, within GFF6079 at 141.802 kb on - strand, within GFF6079 at 141.802 kb on - strand, within GFF6079 at 141.802 kb on - strand, within GFF6079 at 141.802 kb on - strand, within GFF6079 at 142.009 kb on + strand at 142.009 kb on + strand at 142.035 kb on + strand at 142.035 kb on + strand at 142.036 kb on - strand at 142.047 kb on - strand at 142.047 kb on - strand at 142.115 kb on + strand at 142.115 kb on + strand at 142.115 kb on + strand at 142.116 kb on - strand at 142.159 kb on + strand at 142.319 kb on + strand, within GFF6080 at 142.320 kb on - strand, within GFF6080 at 142.585 kb on + strand, within GFF6080 at 142.585 kb on + strand, within GFF6080 at 142.585 kb on + strand, within GFF6080 at 142.586 kb on - strand, within GFF6080 at 142.586 kb on - strand, within GFF6080 at 142.586 kb on - strand, within GFF6080 at 142.670 kb on + strand, within GFF6080 at 142.671 kb on - strand, within GFF6080 at 142.671 kb on - strand, within GFF6080 at 142.671 kb on - strand, within GFF6080 at 142.799 kb on + strand, within GFF6080 at 142.799 kb on + strand, within GFF6080 at 142.906 kb on + strand at 142.906 kb on + strand at 142.969 kb on - strand at 142.969 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 140,585 + -1.6 140,585 + -2.5 140,585 + -1.1 140,585 + +2.8 140,585 + -1.3 140,586 - -0.1 140,586 - -2.0 140,586 - -0.8 140,586 - +0.0 140,586 - -1.4 140,586 - +0.5 140,675 + GFF6078 0.13 -0.1 140,718 - GFF6078 0.18 -0.2 140,768 + GFF6078 0.24 -1.4 140,768 + GFF6078 0.24 -1.3 140,768 + GFF6078 0.24 -1.8 140,768 + GFF6078 0.24 +0.1 140,768 + GFF6078 0.24 -1.3 140,768 + GFF6078 0.24 -1.9 140,768 + GFF6078 0.24 +0.2 140,768 + GFF6078 0.24 -0.6 140,768 + GFF6078 0.24 -0.2 140,769 - GFF6078 0.24 -1.8 140,769 - GFF6078 0.24 +3.2 140,769 - GFF6078 0.24 -0.6 140,769 - GFF6078 0.24 +0.0 140,769 - GFF6078 0.24 -1.9 140,769 - GFF6078 0.24 -2.3 140,808 + GFF6078 0.29 -0.9 140,867 + GFF6078 0.36 -1.4 141,048 - GFF6078 0.58 +1.1 141,057 - GFF6078 0.59 -1.8 141,062 + GFF6078 0.60 +0.8 141,062 + GFF6078 0.60 -3.0 141,062 + GFF6078 0.60 -0.2 141,062 + GFF6078 0.60 -1.5 141,062 + GFF6078 0.60 -0.6 141,062 + GFF6078 0.60 +1.2 141,063 - GFF6078 0.60 +0.9 141,063 - GFF6078 0.60 -0.3 141,063 - GFF6078 0.60 -2.7 141,063 - GFF6078 0.60 +0.2 141,063 - GFF6078 0.60 +0.2 141,063 - GFF6078 0.60 -0.4 141,063 - GFF6078 0.60 -1.4 141,063 - GFF6078 0.60 +0.3 141,063 - GFF6078 0.60 -1.1 141,063 - GFF6078 0.60 -0.1 141,155 + GFF6078 0.71 -0.3 141,155 + GFF6078 0.71 +0.0 141,156 - GFF6078 0.71 +0.5 141,275 + GFF6078 0.86 +0.4 141,275 + GFF6078 0.86 +1.7 141,276 - GFF6078 0.86 +0.7 141,276 - GFF6078 0.86 -1.0 141,276 - GFF6078 0.86 +0.7 141,393 + +0.6 141,393 + +0.7 141,394 - -1.0 141,437 + -1.3 141,437 + -1.9 141,437 + -1.1 141,437 + -0.0 141,437 + -0.1 141,437 + -2.0 141,437 + -0.0 141,437 + +0.2 141,437 + +3.4 141,437 + -0.4 141,438 - -1.0 141,438 - -1.6 141,438 - +0.4 141,438 - +0.3 141,438 - -2.3 141,438 - -0.5 141,438 - -1.4 141,438 - -0.4 141,438 - +2.6 141,544 + +0.9 141,544 + -2.1 141,545 - -0.2 141,545 - -0.1 141,545 - -1.4 141,545 - +1.4 141,555 - -0.0 141,558 + +0.8 141,558 + +0.7 141,558 + -0.1 141,558 + -0.5 141,558 + -0.6 141,558 + -1.9 141,558 + -0.8 141,558 + -0.1 141,558 + +1.4 141,558 + -2.0 141,558 + -0.1 141,559 - -0.3 141,559 - +1.4 141,559 - -1.0 141,559 - -1.6 141,559 - +0.3 141,559 - -0.4 141,559 - +2.4 141,559 - -2.7 141,801 + GFF6079 0.57 -3.3 141,801 + GFF6079 0.57 +0.3 141,801 + GFF6079 0.57 -1.7 141,802 - GFF6079 0.58 +0.4 141,802 - GFF6079 0.58 +3.6 141,802 - GFF6079 0.58 -1.9 141,802 - GFF6079 0.58 +0.6 141,802 - GFF6079 0.58 -1.4 142,009 + -0.9 142,009 + -1.5 142,035 + +0.1 142,035 + +0.6 142,036 - -2.0 142,047 - -3.2 142,047 - +0.4 142,115 + +0.6 142,115 + +2.2 142,115 + -1.0 142,116 - -1.6 142,159 + -1.5 142,319 + GFF6080 0.24 -0.1 142,320 - GFF6080 0.24 +0.6 142,585 + GFF6080 0.55 -2.8 142,585 + GFF6080 0.55 +0.8 142,585 + GFF6080 0.55 +0.1 142,586 - GFF6080 0.55 -1.9 142,586 - GFF6080 0.55 -0.1 142,586 - GFF6080 0.55 -1.2 142,670 + GFF6080 0.65 -0.9 142,671 - GFF6080 0.65 +0.4 142,671 - GFF6080 0.65 +1.4 142,671 - GFF6080 0.65 +0.7 142,799 + GFF6080 0.80 -1.7 142,799 + GFF6080 0.80 +3.4 142,906 + +1.0 142,906 + -0.2 142,969 - -1.0 142,969 - -0.1
Or see this region's nucleotide sequence