Strain Fitness in Variovorax sp. SCN45 around GFF6069

Experiment: Community=guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=guar; Passage=4
129,660	+				-0.1
129,660	+				-0.2
129,660	+				-0.4
129,739	+				-0.1
129,739	+				-1.1
129,739	+				-0.6
129,739	+				+1.2
129,739	+				+1.3
129,740	-				+0.7
129,740	-				-0.8
129,740	-				-1.5
129,790	+				+3.3
129,790	+				-0.7
129,790	+				-1.7
129,791	-				-1.3
129,791	-				-0.5
130,465	+				+2.2
130,514	+				-1.7
130,514	+				+1.0
130,515	-				-1.3
130,646	+				-0.8
130,647	-				-2.2
130,930	-		GFF6069	0.39	-1.0
130,930	-		GFF6069	0.39	-0.3
130,938	+		GFF6069	0.40	-0.7
130,938	+		GFF6069	0.40	+0.4
130,938	+		GFF6069	0.40	+0.7
130,939	-		GFF6069	0.40	-2.5
130,939	-		GFF6069	0.40	+0.6
130,947	+		GFF6069	0.41	+0.4
130,947	+		GFF6069	0.41	-3.3
130,947	+		GFF6069	0.41	-0.7
130,947	+		GFF6069	0.41	-1.3
130,948	-		GFF6069	0.41	-1.0
130,948	-		GFF6069	0.41	-0.1
130,948	-		GFF6069	0.41	+0.6
131,058	+		GFF6069	0.52	-0.6
131,058	+		GFF6069	0.52	+2.6
131,058	+		GFF6069	0.52	-2.5
131,059	-		GFF6069	0.52	+0.2
131,059	-		GFF6069	0.52	+0.4
131,059	-		GFF6069	0.52	+0.6
131,059	-		GFF6069	0.52	-2.5
131,059	-		GFF6069	0.52	+1.8
131,059	-		GFF6069	0.52	-0.3
131,106	+		GFF6069	0.57	-0.3
131,148	+		GFF6069	0.62	-2.6
131,181	+		GFF6069	0.65	-0.6
131,181	+		GFF6069	0.65	-1.2
131,181	+		GFF6069	0.65	-0.8
131,182	-		GFF6069	0.65	-2.6
131,182	-		GFF6069	0.65	-0.4
131,217	+		GFF6069	0.69	+0.7
131,218	-		GFF6069	0.69	+1.6
131,218	-		GFF6069	0.69	+0.6
131,220	+		GFF6069	0.69	+0.2
131,220	+		GFF6069	0.69	+0.9
131,221	-		GFF6069	0.69	+2.2
131,221	-		GFF6069	0.69	+0.6
131,373	+		GFF6069	0.85	+0.7
131,605	+				-2.8
131,605	+				-0.4
131,605	+				+0.7
131,605	+				+0.4
131,605	+				-0.5
131,606	-				+0.2
131,606	-				-0.1
131,665	+				+1.2
131,812	+		GFF6070	0.16	-0.2
132,052	+		GFF6070	0.31	+0.1
132,052	+		GFF6070	0.31	+0.6
132,052	+		GFF6070	0.31	+0.6
132,052	+		GFF6070	0.31	-1.7
132,052	+		GFF6070	0.31	+1.2
132,052	+		GFF6070	0.31	+1.0
132,053	-		GFF6070	0.31	-1.8
132,053	-		GFF6070	0.31	-0.1
132,053	-		GFF6070	0.31	+0.2
132,053	-		GFF6070	0.31	-1.1
132,053	-		GFF6070	0.31	-0.6
132,053	-		GFF6070	0.31	-1.1
132,106	+		GFF6070	0.34	+2.2
132,106	+		GFF6070	0.34	-0.1
132,107	-		GFF6070	0.34	-1.1
132,107	-		GFF6070	0.34	+3.2
132,107	-		GFF6070	0.34	+1.7
132,107	-		GFF6070	0.34	+0.3
132,191	-		GFF6070	0.39	-1.7
132,247	+		GFF6070	0.43	-1.0
132,247	+		GFF6070	0.43	-0.1
132,247	+		GFF6070	0.43	+2.2
132,253	+		GFF6070	0.43	-1.0
132,253	+		GFF6070	0.43	+0.1
132,253	+		GFF6070	0.43	-1.7
132,253	+		GFF6070	0.43	+1.6
132,254	-		GFF6070	0.43	-1.0
132,254	-		GFF6070	0.43	-1.0
132,254	-		GFF6070	0.43	+0.7
132,419	-		GFF6070	0.53	-2.8
132,454	+		GFF6070	0.56	-0.4
132,454	+		GFF6070	0.56	+0.6