Strain Fitness in Variovorax sp. SCN45 around GFF6061

Experiment: Community=guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=guar; Passage=4
121,811	+		GFF6060	0.25	+1.0
121,811	+		GFF6060	0.25	+0.7
121,812	-		GFF6060	0.25	+1.6
121,812	-		GFF6060	0.25	+0.5
122,689	+				-2.5
122,689	+				+0.2
122,690	-				-0.2
122,690	-				+1.0
122,713	+		GFF6061	0.12	+0.2
122,812	+		GFF6061	0.24	-1.6
122,813	-		GFF6061	0.24	-0.3
122,857	+		GFF6061	0.29	-1.3
122,857	+		GFF6061	0.29	-2.0
122,857	+		GFF6061	0.29	-1.7
122,920	+		GFF6061	0.36	+0.9
122,920	+		GFF6061	0.36	-0.8
122,920	+		GFF6061	0.36	-3.1
122,921	-		GFF6061	0.37	-0.2
122,921	-		GFF6061	0.37	-0.2
122,921	-		GFF6061	0.37	-0.2
123,417	+				+0.0
123,518	+				+1.7
123,543	+				+2.2
123,543	+				-1.1
123,543	+				-3.1
123,543	+				-0.0
123,544	-				-0.9
123,544	-				+0.9
123,544	-				-2.2
123,544	-				+2.2
123,544	-				-0.5
123,544	-				-0.2
123,544	-				-1.3
123,583	+				-2.3
123,598	+				+0.9
123,615	+				-0.9
123,616	-				-0.7
123,822	-		GFF6062	0.17	-0.4
124,319	+		GFF6062	0.47	+1.2
124,319	+		GFF6062	0.47	+0.2
124,319	+		GFF6062	0.47	-1.1
124,319	+		GFF6062	0.47	+0.2
124,320	-		GFF6062	0.47	-0.6
124,320	-		GFF6062	0.47	-1.2