Strain Fitness in Variovorax sp. SCN45 around GFF5994

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5993 and GFF5994 overlap by 4 nucleotidesGFF5994 and GFF5995 are separated by 121 nucleotides GFF5993 - putative membrane protein, at 49,927 to 51,273 GFF5993 GFF5994 - Chlorogenate esterase, at 51,270 to 54,026 GFF5994 GFF5995 - LysR family transcriptional regulator STM3121, at 54,148 to 55,083 GFF5995 Position (kb) 51 52 53 54 55Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 50.687 kb on + strand, within GFF5993at 50.688 kb on - strand, within GFF5993at 50.688 kb on - strand, within GFF5993at 50.688 kb on - strand, within GFF5993at 50.688 kb on - strand, within GFF5993at 50.688 kb on - strand, within GFF5993at 50.693 kb on + strand, within GFF5993at 50.693 kb on + strand, within GFF5993at 50.693 kb on + strand, within GFF5993at 50.724 kb on - strand, within GFF5993at 50.805 kb on - strand, within GFF5993at 50.805 kb on - strand, within GFF5993at 50.840 kb on + strand, within GFF5993at 50.840 kb on + strand, within GFF5993at 50.940 kb on - strand, within GFF5993at 51.110 kb on + strand, within GFF5993at 51.111 kb on - strand, within GFF5993at 51.140 kb on + strandat 51.141 kb on - strandat 51.279 kb on + strandat 51.279 kb on + strandat 51.403 kb on + strandat 51.403 kb on + strandat 51.404 kb on - strandat 51.435 kb on - strandat 51.493 kb on + strandat 51.493 kb on + strandat 51.493 kb on + strandat 51.494 kb on - strandat 51.494 kb on - strandat 51.494 kb on - strandat 51.494 kb on - strandat 51.706 kb on + strand, within GFF5994at 51.715 kb on + strand, within GFF5994at 51.715 kb on + strand, within GFF5994at 51.716 kb on - strand, within GFF5994at 51.749 kb on - strand, within GFF5994at 51.784 kb on + strand, within GFF5994at 51.795 kb on - strand, within GFF5994at 51.795 kb on - strand, within GFF5994at 51.875 kb on + strand, within GFF5994at 51.875 kb on + strand, within GFF5994at 52.036 kb on + strand, within GFF5994at 52.036 kb on + strand, within GFF5994at 52.036 kb on + strand, within GFF5994at 52.037 kb on - strand, within GFF5994at 52.037 kb on - strand, within GFF5994at 52.037 kb on - strand, within GFF5994at 52.120 kb on + strand, within GFF5994at 52.121 kb on - strand, within GFF5994at 52.183 kb on + strand, within GFF5994at 52.184 kb on - strand, within GFF5994at 52.184 kb on - strand, within GFF5994at 52.249 kb on + strand, within GFF5994at 52.249 kb on + strand, within GFF5994at 52.250 kb on - strand, within GFF5994at 52.286 kb on - strand, within GFF5994at 52.331 kb on - strand, within GFF5994at 52.331 kb on - strand, within GFF5994at 52.331 kb on - strand, within GFF5994at 52.465 kb on + strand, within GFF5994at 52.465 kb on + strand, within GFF5994at 52.522 kb on + strand, within GFF5994at 52.523 kb on - strand, within GFF5994at 52.756 kb on + strand, within GFF5994at 52.756 kb on + strand, within GFF5994at 52.756 kb on + strand, within GFF5994at 52.756 kb on + strand, within GFF5994at 52.756 kb on + strand, within GFF5994at 52.756 kb on + strand, within GFF5994at 52.756 kb on + strand, within GFF5994at 52.756 kb on + strand, within GFF5994at 52.757 kb on - strand, within GFF5994at 52.757 kb on - strand, within GFF5994at 52.757 kb on - strand, within GFF5994at 52.757 kb on - strand, within GFF5994at 52.757 kb on - strand, within GFF5994at 52.757 kb on - strand, within GFF5994at 52.757 kb on - strand, within GFF5994at 52.825 kb on + strand, within GFF5994at 52.826 kb on - strand, within GFF5994at 52.862 kb on - strand, within GFF5994at 52.897 kb on + strand, within GFF5994at 52.898 kb on - strand, within GFF5994at 52.898 kb on - strand, within GFF5994at 53.045 kb on + strand, within GFF5994at 53.045 kb on + strand, within GFF5994at 53.046 kb on - strand, within GFF5994at 53.046 kb on - strand, within GFF5994at 53.152 kb on + strand, within GFF5994at 53.153 kb on - strand, within GFF5994at 53.153 kb on - strand, within GFF5994at 53.155 kb on + strand, within GFF5994at 53.155 kb on + strand, within GFF5994at 53.201 kb on - strand, within GFF5994at 53.201 kb on - strand, within GFF5994at 53.236 kb on + strand, within GFF5994at 53.236 kb on + strand, within GFF5994at 53.236 kb on + strand, within GFF5994at 53.236 kb on + strand, within GFF5994at 53.236 kb on + strand, within GFF5994at 53.237 kb on - strand, within GFF5994at 53.237 kb on - strand, within GFF5994at 53.260 kb on + strand, within GFF5994at 53.260 kb on + strand, within GFF5994at 53.260 kb on + strand, within GFF5994at 53.260 kb on + strand, within GFF5994at 53.260 kb on + strand, within GFF5994at 53.261 kb on - strand, within GFF5994at 53.261 kb on - strand, within GFF5994at 53.261 kb on - strand, within GFF5994at 53.302 kb on + strand, within GFF5994at 53.302 kb on + strand, within GFF5994at 53.302 kb on + strand, within GFF5994at 53.303 kb on - strand, within GFF5994at 53.303 kb on - strand, within GFF5994at 53.326 kb on + strand, within GFF5994at 53.327 kb on - strand, within GFF5994at 53.327 kb on - strand, within GFF5994at 53.386 kb on + strand, within GFF5994at 53.387 kb on - strand, within GFF5994at 53.465 kb on - strand, within GFF5994at 53.465 kb on - strand, within GFF5994at 53.473 kb on + strand, within GFF5994at 53.474 kb on - strand, within GFF5994at 53.668 kb on + strand, within GFF5994at 53.668 kb on + strand, within GFF5994at 53.669 kb on - strand, within GFF5994at 54.088 kb on + strandat 54.088 kb on + strandat 54.088 kb on + strandat 54.088 kb on + strandat 54.104 kb on + strandat 54.104 kb on + strandat 54.104 kb on + strandat 54.105 kb on - strandat 54.115 kb on - strandat 54.119 kb on + strandat 54.119 kb on + strandat 54.120 kb on - strandat 54.145 kb on + strandat 54.145 kb on + strandat 54.155 kb on + strandat 54.155 kb on + strandat 54.155 kb on + strandat 54.155 kb on + strandat 54.155 kb on + strandat 54.156 kb on - strandat 54.156 kb on - strandat 54.169 kb on + strandat 54.169 kb on + strandat 54.775 kb on + strand, within GFF5995at 54.775 kb on + strand, within GFF5995at 54.776 kb on - strand, within GFF5995at 54.934 kb on + strand, within GFF5995at 54.934 kb on + strand, within GFF5995at 54.934 kb on + strand, within GFF5995

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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50,687 + GFF5993 0.56 -1.2
50,688 - GFF5993 0.56 +0.3
50,688 - GFF5993 0.56 -0.8
50,688 - GFF5993 0.56 -1.1
50,688 - GFF5993 0.56 -0.3
50,688 - GFF5993 0.56 +0.2
50,693 + GFF5993 0.57 -1.5
50,693 + GFF5993 0.57 +0.6
50,693 + GFF5993 0.57 -1.3
50,724 - GFF5993 0.59 +1.9
50,805 - GFF5993 0.65 -0.9
50,805 - GFF5993 0.65 +0.2
50,840 + GFF5993 0.68 -3.7
50,840 + GFF5993 0.68 +0.9
50,940 - GFF5993 0.75 +0.6
51,110 + GFF5993 0.88 +0.4
51,111 - GFF5993 0.88 -1.5
51,140 + -1.7
51,141 - -0.8
51,279 + +0.0
51,279 + -0.1
51,403 + -0.4
51,403 + -1.4
51,404 - +2.2
51,435 - -1.6
51,493 + -0.4
51,493 + +0.4
51,493 + -0.7
51,494 - +3.2
51,494 - -0.1
51,494 - -0.1
51,494 - -0.5
51,706 + GFF5994 0.16 -0.0
51,715 + GFF5994 0.16 -2.5
51,715 + GFF5994 0.16 +1.2
51,716 - GFF5994 0.16 -0.6
51,749 - GFF5994 0.17 -0.1
51,784 + GFF5994 0.19 +0.4
51,795 - GFF5994 0.19 -2.6
51,795 - GFF5994 0.19 -1.1
51,875 + GFF5994 0.22 +2.9
51,875 + GFF5994 0.22 -1.3
52,036 + GFF5994 0.28 -2.9
52,036 + GFF5994 0.28 -0.3
52,036 + GFF5994 0.28 +0.4
52,037 - GFF5994 0.28 +0.3
52,037 - GFF5994 0.28 -0.4
52,037 - GFF5994 0.28 -0.1
52,120 + GFF5994 0.31 -0.7
52,121 - GFF5994 0.31 +1.2
52,183 + GFF5994 0.33 -0.7
52,184 - GFF5994 0.33 -1.3
52,184 - GFF5994 0.33 +1.6
52,249 + GFF5994 0.36 -0.3
52,249 + GFF5994 0.36 -0.6
52,250 - GFF5994 0.36 +0.2
52,286 - GFF5994 0.37 -1.7
52,331 - GFF5994 0.38 +0.4
52,331 - GFF5994 0.38 -0.8
52,331 - GFF5994 0.38 -0.6
52,465 + GFF5994 0.43 -1.5
52,465 + GFF5994 0.43 +2.0
52,522 + GFF5994 0.45 -1.1
52,523 - GFF5994 0.45 +0.2
52,756 + GFF5994 0.54 +0.0
52,756 + GFF5994 0.54 -0.5
52,756 + GFF5994 0.54 -0.8
52,756 + GFF5994 0.54 -0.1
52,756 + GFF5994 0.54 +1.2
52,756 + GFF5994 0.54 +0.3
52,756 + GFF5994 0.54 +1.7
52,756 + GFF5994 0.54 -0.3
52,757 - GFF5994 0.54 +0.5
52,757 - GFF5994 0.54 +0.9
52,757 - GFF5994 0.54 +0.1
52,757 - GFF5994 0.54 +1.0
52,757 - GFF5994 0.54 +0.9
52,757 - GFF5994 0.54 +0.8
52,757 - GFF5994 0.54 +1.8
52,825 + GFF5994 0.56 -0.6
52,826 - GFF5994 0.56 -0.4
52,862 - GFF5994 0.58 +0.6
52,897 + GFF5994 0.59 -2.3
52,898 - GFF5994 0.59 -0.1
52,898 - GFF5994 0.59 -0.1
53,045 + GFF5994 0.64 -0.4
53,045 + GFF5994 0.64 -2.0
53,046 - GFF5994 0.64 -2.3
53,046 - GFF5994 0.64 -1.1
53,152 + GFF5994 0.68 -0.2
53,153 - GFF5994 0.68 -0.1
53,153 - GFF5994 0.68 -1.7
53,155 + GFF5994 0.68 -1.1
53,155 + GFF5994 0.68 +1.3
53,201 - GFF5994 0.70 +1.4
53,201 - GFF5994 0.70 +0.4
53,236 + GFF5994 0.71 +0.7
53,236 + GFF5994 0.71 +0.5
53,236 + GFF5994 0.71 -0.6
53,236 + GFF5994 0.71 +0.2
53,236 + GFF5994 0.71 +0.4
53,237 - GFF5994 0.71 +0.5
53,237 - GFF5994 0.71 -1.2
53,260 + GFF5994 0.72 -2.6
53,260 + GFF5994 0.72 -0.2
53,260 + GFF5994 0.72 -0.6
53,260 + GFF5994 0.72 -1.6
53,260 + GFF5994 0.72 -1.0
53,261 - GFF5994 0.72 -0.1
53,261 - GFF5994 0.72 +0.1
53,261 - GFF5994 0.72 +1.3
53,302 + GFF5994 0.74 -0.4
53,302 + GFF5994 0.74 -0.4
53,302 + GFF5994 0.74 +1.5
53,303 - GFF5994 0.74 -1.1
53,303 - GFF5994 0.74 -0.5
53,326 + GFF5994 0.75 -0.1
53,327 - GFF5994 0.75 -1.3
53,327 - GFF5994 0.75 -0.6
53,386 + GFF5994 0.77 -0.8
53,387 - GFF5994 0.77 +1.5
53,465 - GFF5994 0.80 -1.5
53,465 - GFF5994 0.80 -1.0
53,473 + GFF5994 0.80 -2.0
53,474 - GFF5994 0.80 -1.1
53,668 + GFF5994 0.87 +1.2
53,668 + GFF5994 0.87 -0.5
53,669 - GFF5994 0.87 -1.3
54,088 + +1.4
54,088 + -2.1
54,088 + -1.8
54,088 + -3.9
54,104 + -1.0
54,104 + -3.1
54,104 + +0.8
54,105 - +1.2
54,115 - -0.9
54,119 + -0.7
54,119 + +0.9
54,120 - +0.6
54,145 + -1.8
54,145 + +1.0
54,155 + +1.2
54,155 + +0.6
54,155 + -0.4
54,155 + +0.6
54,155 + -0.9
54,156 - -1.1
54,156 - +0.9
54,169 + -1.1
54,169 + +1.5
54,775 + GFF5995 0.67 +0.6
54,775 + GFF5995 0.67 +1.2
54,776 - GFF5995 0.67 +0.1
54,934 + GFF5995 0.84 -1.7
54,934 + GFF5995 0.84 -0.2
54,934 + GFF5995 0.84 +0.5

Or see this region's nucleotide sequence