Strain Fitness in Variovorax sp. SCN45 around GFF5967

Experiment: Community=guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=guar; Passage=4
20,452	+		GFF5966	0.60	-2.7
20,452	+		GFF5966	0.60	-3.4
20,452	+		GFF5966	0.60	+1.2
20,453	-		GFF5966	0.60	-1.9
20,455	+		GFF5966	0.60	-1.6
20,456	-		GFF5966	0.60	-3.2
20,543	-		GFF5966	0.64	+1.1
21,534	+				-1.2
21,535	-				+0.2
22,296	+		GFF5967	0.63	-1.3
22,296	+		GFF5967	0.63	+0.6
22,297	-		GFF5967	0.63	-0.8
22,297	-		GFF5967	0.63	-2.8
22,308	+		GFF5967	0.64	+1.6
22,338	+		GFF5967	0.66	+0.2
22,338	+		GFF5967	0.66	+1.2
22,338	+		GFF5967	0.66	+0.6
22,338	+		GFF5967	0.66	-0.8
22,338	+		GFF5967	0.66	+1.0
22,339	-		GFF5967	0.66	+0.2
22,339	-		GFF5967	0.66	+0.5
22,339	-		GFF5967	0.66	+0.1
22,339	-		GFF5967	0.66	-0.4
22,339	-		GFF5967	0.66	-0.8
22,392	+		GFF5967	0.70	-0.6
22,392	+		GFF5967	0.70	-2.7
22,815	+				-0.2
22,815	+				-3.9
22,816	-				+0.4
22,816	-				-0.5
22,825	+				+0.7
22,826	-				+1.0
22,826	-				+1.3
22,826	-				+1.3
22,826	-				+1.0
22,826	-				-1.9
22,826	-				+2.2
22,826	-				-0.4
22,852	+				-0.1
22,852	+				+0.1
22,853	-				-0.1
22,853	-				-0.0
22,900	+				-0.8
22,900	+				+0.2
22,900	+				-0.3
22,900	+				-1.8
22,900	+				+0.2
22,901	-				-0.1
22,901	-				+0.8
23,200	+		GFF5968	0.42	-1.2
23,200	+		GFF5968	0.42	+2.2
23,201	-		GFF5968	0.42	+0.8
23,201	-		GFF5968	0.42	-0.5
23,201	-		GFF5968	0.42	-0.4
23,407	+		GFF5968	0.65	-0.1
23,407	+		GFF5968	0.65	+0.6
23,410	+		GFF5968	0.66	-0.4
23,410	+		GFF5968	0.66	+3.4
23,410	+		GFF5968	0.66	-0.8
23,410	+		GFF5968	0.66	+0.4
23,410	+		GFF5968	0.66	-0.6
23,411	-		GFF5968	0.66	+1.9
23,411	-		GFF5968	0.66	-2.8
23,411	-		GFF5968	0.66	-1.6
23,411	-		GFF5968	0.66	+0.9
23,411	-		GFF5968	0.66	-0.9
23,411	-		GFF5968	0.66	+1.1
23,628	+				+0.8
23,628	+				-0.4
23,628	+				+1.0
23,628	+				+1.1
23,628	+				-2.1
23,628	+				+0.8
23,629	-				-0.4
23,629	-				-2.7
23,629	-				-1.1
23,629	-				-1.9