Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5914 and GFF5915 are separated by 18 nucleotides GFF5915 and GFF5916 are separated by 71 nucleotides GFF5916 and GFF5917 are separated by 58 nucleotides GFF5917 and GFF5918 are separated by 41 nucleotides
GFF5914 - hypothetical protein, at 129,594 to 130,706
GFF5914
GFF5915 - T6SS secretion lipoprotein TssJ (VasD), at 130,725 to 131,237
GFF5915
GFF5916 - T6SS component TssA (ImpA), at 131,309 to 132,349
GFF5916
GFF5917 - T6SS component TssB (ImpB/VipA), at 132,408 to 132,923
GFF5917
GFF5918 - T6SS component TssC (ImpC/VipB), at 132,965 to 134,458
GFF5918
Position (kb) 131
132
133 Strain fitness (log2 ratio) -2
-1
0
1
2 at 130.726 kb on + strand at 131.020 kb on + strand, within GFF5915 at 131.021 kb on - strand, within GFF5915 at 131.206 kb on + strand at 131.223 kb on - strand at 131.282 kb on + strand at 131.487 kb on + strand, within GFF5916 at 131.640 kb on + strand, within GFF5916 at 131.640 kb on + strand, within GFF5916 at 131.640 kb on + strand, within GFF5916 at 131.641 kb on - strand, within GFF5916 at 131.738 kb on + strand, within GFF5916 at 131.738 kb on + strand, within GFF5916 at 131.840 kb on + strand, within GFF5916 at 132.475 kb on + strand, within GFF5917 at 132.483 kb on + strand, within GFF5917 at 132.484 kb on - strand, within GFF5917 at 133.266 kb on - strand, within GFF5918 at 133.266 kb on - strand, within GFF5918
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 130,726 + -1.2 131,020 + GFF5915 0.58 -0.5 131,021 - GFF5915 0.58 +0.0 131,206 + -1.2 131,223 - -0.7 131,282 + -1.4 131,487 + GFF5916 0.17 -1.0 131,640 + GFF5916 0.32 -1.3 131,640 + GFF5916 0.32 -1.1 131,640 + GFF5916 0.32 -2.3 131,641 - GFF5916 0.32 +2.2 131,738 + GFF5916 0.41 +0.1 131,738 + GFF5916 0.41 -0.2 131,840 + GFF5916 0.51 +0.3 132,475 + GFF5917 0.13 -2.5 132,483 + GFF5917 0.15 -1.3 132,484 - GFF5917 0.15 +1.0 133,266 - GFF5918 0.20 +0.8 133,266 - GFF5918 0.20 -2.0
Or see this region's nucleotide sequence