Strain Fitness in Variovorax sp. SCN45 around GFF5860

Experiment: Community=guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=guar; Passage=4
59,929	+		GFF5858	0.80	-1.0
59,987	+				+0.4
59,987	+				-0.7
59,987	+				+0.1
59,987	+				-1.6
59,987	+				+1.7
59,987	+				-0.2
59,987	+				-0.8
59,987	+				-0.6
59,987	+				+0.4
59,987	+				+0.3
59,987	+				-1.0
59,987	+				-1.7
59,988	-				+0.1
59,988	-				+0.1
59,988	-				+0.2
59,988	-				-0.4
59,988	-				-2.9
59,988	-				+1.3
59,988	-				+1.4
59,988	-				+1.4
60,093	+				-0.7
60,118	-				-0.3
60,118	-				-0.5
60,508	+		GFF5859	0.47	-0.6
60,508	+		GFF5859	0.47	+0.4
60,508	+		GFF5859	0.47	-1.6
60,508	+		GFF5859	0.47	-2.2
60,509	-		GFF5859	0.47	+2.4
60,509	-		GFF5859	0.47	-2.2
60,509	-		GFF5859	0.47	-0.4
60,509	-		GFF5859	0.47	-1.8
60,509	-		GFF5859	0.47	-0.7
60,509	-		GFF5859	0.47	-1.5
60,517	+		GFF5859	0.48	-0.1
60,517	+		GFF5859	0.48	+1.4
60,517	+		GFF5859	0.48	-1.7
60,517	+		GFF5859	0.48	-0.4
60,517	+		GFF5859	0.48	+0.1
60,517	+		GFF5859	0.48	-2.3
60,517	+		GFF5859	0.48	+0.4
60,517	+		GFF5859	0.48	+1.4
60,517	+		GFF5859	0.48	+1.3
60,517	+		GFF5859	0.48	+1.0
60,517	+		GFF5859	0.48	-2.2
60,517	+		GFF5859	0.48	+0.3
60,517	+		GFF5859	0.48	-1.0
60,517	+		GFF5859	0.48	-1.2
60,517	+		GFF5859	0.48	-0.1
60,518	-		GFF5859	0.48	+0.4
60,518	-		GFF5859	0.48	+0.4
60,518	-		GFF5859	0.48	+0.7
60,518	-		GFF5859	0.48	-0.1
60,518	-		GFF5859	0.48	-0.4
60,518	-		GFF5859	0.48	-1.3
60,518	-		GFF5859	0.48	-2.6
60,518	-		GFF5859	0.48	+0.4
60,518	-		GFF5859	0.48	+0.4
60,518	-		GFF5859	0.48	-0.6
60,518	-		GFF5859	0.48	-1.9
60,518	-		GFF5859	0.48	-2.4
60,518	-		GFF5859	0.48	+1.7
60,739	+		GFF5859	0.78	+0.4
60,739	+		GFF5859	0.78	+0.1
60,739	+		GFF5859	0.78	-2.6
60,740	-		GFF5859	0.78	+0.4
60,981	+				+0.5
60,981	+				+0.8
60,981	+				-0.7
60,981	+				+0.4
60,981	+				-1.8
60,981	+				+0.5
60,982	-				-2.2
60,982	-				-0.1
60,982	-				-1.0
60,982	-				+0.4
60,982	-				-0.7
61,000	-				-0.6
61,069	-				-1.7
61,149	+				+1.4
61,149	+				-0.7
61,149	+				-0.1
61,149	+				+0.7
61,149	+				-0.3
61,149	+				+0.1
61,149	+				-0.4
61,149	+				+2.5
61,149	+				-2.9
61,149	+				-1.3
61,149	+				-0.7
61,149	+				+2.4
61,149	+				-0.4
61,149	+				-0.4
61,150	-				-2.0
61,150	-				+0.2
61,150	-				-0.6
61,150	-				-1.7
61,150	-				-2.0
61,150	-				+0.3
61,150	-				+1.1
61,150	-				+0.1
61,150	-				-2.2
61,150	-				+1.1
61,488	+		GFF5860	0.23	-0.8
61,488	+		GFF5860	0.23	-1.9
61,488	+		GFF5860	0.23	-0.3
61,488	+		GFF5860	0.23	-0.3
61,489	-		GFF5860	0.23	-2.2
61,536	+		GFF5860	0.25	-0.6
61,536	+		GFF5860	0.25	+0.1
61,536	+		GFF5860	0.25	-0.9
61,536	+		GFF5860	0.25	-1.3
61,536	+		GFF5860	0.25	-0.6
61,536	+		GFF5860	0.25	+0.2
61,536	+		GFF5860	0.25	-0.2
61,537	-		GFF5860	0.25	-0.4
61,537	-		GFF5860	0.25	-2.0
61,537	-		GFF5860	0.25	+0.4
61,537	-		GFF5860	0.25	-0.9
61,537	-		GFF5860	0.25	+0.7
61,537	-		GFF5860	0.25	-2.1
61,537	-		GFF5860	0.25	+0.8
61,549	-		GFF5860	0.26	+1.0
61,575	+		GFF5860	0.27	-0.7
61,575	+		GFF5860	0.27	+1.7
61,575	+		GFF5860	0.27	-0.9
61,576	-		GFF5860	0.27	-1.3
61,584	+		GFF5860	0.27	-0.9
61,584	+		GFF5860	0.27	-0.7
61,585	-		GFF5860	0.27	-0.0
61,611	+		GFF5860	0.28	+1.0
61,611	+		GFF5860	0.28	+1.0
61,611	+		GFF5860	0.28	-1.8
61,611	+		GFF5860	0.28	-0.7
61,611	+		GFF5860	0.28	-0.4
61,611	+		GFF5860	0.28	-1.5
61,611	+		GFF5860	0.28	-0.0
61,611	+		GFF5860	0.28	+3.0
61,611	+		GFF5860	0.28	-1.4
61,611	+		GFF5860	0.28	-1.1
61,611	+		GFF5860	0.28	-1.8
61,611	+		GFF5860	0.28	+1.7
61,612	-		GFF5860	0.28	+0.7
61,612	-		GFF5860	0.28	-1.0
61,612	-		GFF5860	0.28	-1.0
61,612	-		GFF5860	0.28	-0.1
61,612	-		GFF5860	0.28	-1.4
61,612	-		GFF5860	0.28	+1.1
61,612	-		GFF5860	0.28	-0.8
61,612	-		GFF5860	0.28	+0.1
61,612	-		GFF5860	0.28	+0.4
61,612	-		GFF5860	0.28	-0.4
61,615	+		GFF5860	0.29	-0.9
61,615	+		GFF5860	0.29	+0.8
61,615	+		GFF5860	0.29	-0.6
61,615	+		GFF5860	0.29	+1.2
61,615	+		GFF5860	0.29	+0.5
61,615	+		GFF5860	0.29	-0.6
61,615	+		GFF5860	0.29	-0.8
61,615	+		GFF5860	0.29	+0.8
61,615	+		GFF5860	0.29	+0.1
61,615	+		GFF5860	0.29	-1.2
61,615	+		GFF5860	0.29	+0.8
61,615	+		GFF5860	0.29	+0.5
61,615	+		GFF5860	0.29	-2.0
61,615	+		GFF5860	0.29	-1.4
61,615	+		GFF5860	0.29	+0.1
61,616	-		GFF5860	0.29	+0.3
61,616	-		GFF5860	0.29	+0.4
61,616	-		GFF5860	0.29	-3.6
61,616	-		GFF5860	0.29	-1.4
61,616	-		GFF5860	0.29	-1.7
61,616	-		GFF5860	0.29	+0.7
61,616	-		GFF5860	0.29	-0.9
61,616	-		GFF5860	0.29	+0.1
61,616	-		GFF5860	0.29	-0.3
61,616	-		GFF5860	0.29	-1.4
61,616	-		GFF5860	0.29	-0.7
61,616	-		GFF5860	0.29	+0.7
61,616	-		GFF5860	0.29	+0.2
61,616	-		GFF5860	0.29	-1.8
61,616	-		GFF5860	0.29	-3.3
61,616	-		GFF5860	0.29	-0.9
61,616	-		GFF5860	0.29	+0.5
61,616	-		GFF5860	0.29	-0.6
61,616	-		GFF5860	0.29	-0.1
61,616	-		GFF5860	0.29	-0.0
61,650	+		GFF5860	0.30	-1.3
61,650	+		GFF5860	0.30	-2.6
61,650	+		GFF5860	0.30	+0.4
61,650	+		GFF5860	0.30	-3.6
61,650	+		GFF5860	0.30	+0.5
61,650	+		GFF5860	0.30	-2.3
61,650	+		GFF5860	0.30	-0.3
61,651	-		GFF5860	0.30	+1.8
61,668	+		GFF5860	0.31	-1.2
61,668	+		GFF5860	0.31	-1.9
61,668	+		GFF5860	0.31	+0.7
61,668	-		GFF5860	0.31	-1.2
61,669	-		GFF5860	0.31	+1.0
61,669	-		GFF5860	0.31	-1.7
61,669	-		GFF5860	0.31	-0.6
61,669	-		GFF5860	0.31	+1.4
61,692	+		GFF5860	0.32	-1.7
61,692	+		GFF5860	0.32	-3.1
61,692	+		GFF5860	0.32	+1.8
61,692	+		GFF5860	0.32	-0.0
61,692	+		GFF5860	0.32	-1.6
61,693	-		GFF5860	0.32	+1.1
61,693	-		GFF5860	0.32	-0.2
61,693	-		GFF5860	0.32	+0.1
61,701	+		GFF5860	0.32	-0.6
61,701	+		GFF5860	0.32	-0.7
61,702	-		GFF5860	0.32	+0.2
61,702	-		GFF5860	0.32	+2.4
61,702	-		GFF5860	0.32	-2.2
61,824	+		GFF5860	0.37	-1.7
61,824	+		GFF5860	0.37	+2.4
61,824	+		GFF5860	0.37	-0.1
61,824	+		GFF5860	0.37	+0.3
61,824	+		GFF5860	0.37	+0.2
61,824	+		GFF5860	0.37	+1.2
61,824	+		GFF5860	0.37	-2.7
61,839	+		GFF5860	0.38	-0.8
61,839	+		GFF5860	0.38	+0.2
61,839	+		GFF5860	0.38	-3.6
61,839	+		GFF5860	0.38	+2.7
61,839	+		GFF5860	0.38	+0.1
61,839	+		GFF5860	0.38	+2.7
61,839	+		GFF5860	0.38	+1.2
61,839	+		GFF5860	0.38	+2.2
61,839	+		GFF5860	0.38	+0.1
61,839	+		GFF5860	0.38	-1.3
61,839	+		GFF5860	0.38	-1.2
61,839	+		GFF5860	0.38	-0.0
61,839	+		GFF5860	0.38	+1.2
61,839	+		GFF5860	0.38	+0.1
61,839	+		GFF5860	0.38	-1.2
61,839	+		GFF5860	0.38	-0.1
61,839	+		GFF5860	0.38	+0.9
61,839	+		GFF5860	0.38	+0.3
61,839	+		GFF5860	0.38	-0.9
61,839	+		GFF5860	0.38	+0.8
61,839	+		GFF5860	0.38	-2.2
61,840	-		GFF5860	0.38	-0.6
61,840	-		GFF5860	0.38	+0.6
61,840	-		GFF5860	0.38	-1.0
61,840	-		GFF5860	0.38	-3.2
61,840	-		GFF5860	0.38	+0.1
61,840	-		GFF5860	0.38	+1.7
61,840	-		GFF5860	0.38	+0.1
61,840	-		GFF5860	0.38	-0.6
61,840	-		GFF5860	0.38	+0.8
61,840	-		GFF5860	0.38	-1.2
61,840	-		GFF5860	0.38	+1.4
61,840	-		GFF5860	0.38	-1.4
61,872	+		GFF5860	0.39	+1.5
61,872	+		GFF5860	0.39	+0.5
61,872	+		GFF5860	0.39	+2.4
61,872	+		GFF5860	0.39	-1.7
61,873	-		GFF5860	0.39	+3.0
61,873	-		GFF5860	0.39	+0.4
61,873	-		GFF5860	0.39	-2.5
61,873	-		GFF5860	0.39	+2.2
61,873	-		GFF5860	0.39	-0.7
61,873	-		GFF5860	0.39	+0.5
61,873	-		GFF5860	0.39	+0.0
61,902	+		GFF5860	0.40	-1.7
61,902	+		GFF5860	0.40	-2.7
61,902	+		GFF5860	0.40	-0.8
61,902	+		GFF5860	0.40	+0.6
61,903	-		GFF5860	0.40	+0.9
61,903	-		GFF5860	0.40	-0.8
61,903	-		GFF5860	0.40	+1.2
61,903	-		GFF5860	0.40	+0.9
61,903	-		GFF5860	0.40	+0.4
61,903	-		GFF5860	0.40	+0.3
61,903	-		GFF5860	0.40	-1.5
61,903	-		GFF5860	0.40	+3.2
61,909	-		GFF5860	0.41	-1.4
61,909	-		GFF5860	0.41	+2.4
62,002	-		GFF5860	0.44	+0.5
62,127	+		GFF5860	0.50	-0.7
62,127	+		GFF5860	0.50	+2.5
62,127	+		GFF5860	0.50	-0.2
62,127	+		GFF5860	0.50	+0.2
62,127	+		GFF5860	0.50	+0.4
62,128	-		GFF5860	0.50	+0.2
62,128	-		GFF5860	0.50	-0.8
62,128	-		GFF5860	0.50	-0.9
62,128	-		GFF5860	0.50	-0.7
62,166	+		GFF5860	0.51	+0.9
62,166	+		GFF5860	0.51	+1.4
62,166	+		GFF5860	0.51	-1.2
62,166	+		GFF5860	0.51	+1.4
62,166	+		GFF5860	0.51	-2.6
62,166	+		GFF5860	0.51	+1.3
62,166	+		GFF5860	0.51	+1.0
62,167	-		GFF5860	0.51	+2.4
62,167	-		GFF5860	0.51	-3.0
62,167	-		GFF5860	0.51	+2.1
62,167	-		GFF5860	0.51	-2.0
62,167	-		GFF5860	0.51	+2.2
62,167	-		GFF5860	0.51	-1.6
62,167	-		GFF5860	0.51	+0.5
62,410	-		GFF5860	0.61	-0.7
62,461	-		GFF5860	0.63	-1.6
62,461	-		GFF5860	0.63	+0.2
62,472	+		GFF5860	0.64	+0.1
62,472	+		GFF5860	0.64	-0.6
62,472	+		GFF5860	0.64	+1.0
62,472	+		GFF5860	0.64	+0.6
62,472	+		GFF5860	0.64	-0.3
62,472	+		GFF5860	0.64	+1.3
62,472	+		GFF5860	0.64	-3.0
62,472	+		GFF5860	0.64	-2.6
62,473	-		GFF5860	0.64	-0.7
62,473	-		GFF5860	0.64	-0.3
62,473	-		GFF5860	0.64	+1.1
62,473	-		GFF5860	0.64	+2.8
62,532	+		GFF5860	0.66	+2.4
62,532	+		GFF5860	0.66	-1.7
62,532	+		GFF5860	0.66	-2.4
62,532	+		GFF5860	0.66	-0.8
62,532	+		GFF5860	0.66	-1.3
62,532	+		GFF5860	0.66	-3.1
62,532	+		GFF5860	0.66	-0.3
62,533	-		GFF5860	0.66	+2.4
62,533	-		GFF5860	0.66	-1.7
62,533	-		GFF5860	0.66	-3.7
62,533	-		GFF5860	0.66	-1.1
62,533	-		GFF5860	0.66	-1.2
62,533	-		GFF5860	0.66	-2.2
62,533	-		GFF5860	0.66	+2.9
62,533	-		GFF5860	0.66	+0.5
62,631	+		GFF5860	0.70	-0.2
62,631	+		GFF5860	0.70	-2.7
62,631	+		GFF5860	0.70	+0.1
62,631	+		GFF5860	0.70	-0.5
62,631	+		GFF5860	0.70	-0.4
62,631	+		GFF5860	0.70	-0.6
62,631	+		GFF5860	0.70	+0.2
62,631	+		GFF5860	0.70	-0.3
62,631	+		GFF5860	0.70	+0.1
62,631	+		GFF5860	0.70	-3.1
62,631	+		GFF5860	0.70	+0.9
62,631	+		GFF5860	0.70	-0.4
62,631	+		GFF5860	0.70	-1.0
62,631	+		GFF5860	0.70	+1.4
62,632	-		GFF5860	0.70	+0.0
62,632	-		GFF5860	0.70	-0.7
62,632	-		GFF5860	0.70	+2.0
62,632	-		GFF5860	0.70	-0.6
62,632	-		GFF5860	0.70	+0.4
62,632	-		GFF5860	0.70	+2.4
62,632	-		GFF5860	0.70	-0.0
62,632	-		GFF5860	0.70	+0.1
62,805	+		GFF5860	0.77	-0.7
62,805	+		GFF5860	0.77	-0.6
62,805	+		GFF5860	0.77	-0.2
62,805	+		GFF5860	0.77	+2.8
62,805	+		GFF5860	0.77	-0.3
62,805	+		GFF5860	0.77	+0.7
62,805	+		GFF5860	0.77	-3.9
62,805	+		GFF5860	0.77	+0.4
62,806	-		GFF5860	0.77	-0.9
62,806	-		GFF5860	0.77	-0.7
62,806	-		GFF5860	0.77	-1.9
62,806	-		GFF5860	0.77	-0.2
62,806	-		GFF5860	0.77	+0.2
62,880	+		GFF5860	0.80	-0.7
62,880	+		GFF5860	0.80	+0.0
62,880	+		GFF5860	0.80	+0.5
62,881	-		GFF5860	0.81	-1.7
62,881	-		GFF5860	0.81	-0.1
62,881	-		GFF5860	0.81	-0.3
62,881	-		GFF5860	0.81	-0.2
62,881	-		GFF5860	0.81	-1.0
63,204	+				-1.3
63,205	-				+0.9
63,205	-				-2.2
63,205	-				-0.7
63,205	-				-4.1
63,205	-				-0.1
63,361	+				+1.0
63,361	+				+2.1
63,361	+				+0.3
63,361	+				-1.8
63,361	+				-0.1
63,361	+				+0.7
63,361	+				-0.7
63,362	-				-1.7
63,362	-				+1.8
63,362	-				-0.3
63,362	-				+0.0
63,362	-				-0.7
63,362	-				-1.3
63,362	-				+0.1
63,495	-				+1.1
63,518	+				-1.6
63,518	+				+0.1