Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5815 and GFF5816 are separated by 37 nucleotides GFF5816 and GFF5817 are separated by 60 nucleotides GFF5817 and GFF5818 overlap by 4 nucleotides GFF5818 and GFF5819 are separated by 242 nucleotides
GFF5815 - Uncharacterized MFS-type transporter, at 194,187 to 195,401
GFF5815
GFF5816 - no description, at 195,439 to 196,311
GFF5816
GFF5817 - Two-component system sensor histidine kinase, at 196,372 to 197,745
GFF5817
GFF5818 - Two-component transcriptional response regulator, NarL/FixJ family, at 197,742 to 198,377
GFF5818
GFF5819 - no description, at 198,620 to 198,874
GFF5819
Position (kb) 196
197
198 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 195.652 kb on + strand, within GFF5816 at 195.653 kb on - strand, within GFF5816 at 195.653 kb on - strand, within GFF5816 at 195.653 kb on - strand, within GFF5816 at 195.653 kb on - strand, within GFF5816 at 195.653 kb on - strand, within GFF5816 at 195.722 kb on + strand, within GFF5816 at 195.824 kb on + strand, within GFF5816 at 195.965 kb on + strand, within GFF5816 at 196.174 kb on + strand, within GFF5816 at 196.175 kb on - strand, within GFF5816 at 196.357 kb on + strand at 196.504 kb on + strand at 196.505 kb on - strand at 196.505 kb on - strand at 196.505 kb on - strand at 196.537 kb on + strand, within GFF5817 at 196.537 kb on + strand, within GFF5817 at 196.537 kb on + strand, within GFF5817 at 196.537 kb on + strand, within GFF5817 at 196.538 kb on - strand, within GFF5817 at 196.538 kb on - strand, within GFF5817 at 196.538 kb on - strand, within GFF5817 at 196.538 kb on - strand, within GFF5817 at 196.538 kb on - strand, within GFF5817 at 196.538 kb on - strand, within GFF5817 at 196.573 kb on + strand, within GFF5817 at 196.573 kb on + strand, within GFF5817 at 196.574 kb on - strand, within GFF5817 at 196.639 kb on + strand, within GFF5817 at 196.666 kb on + strand, within GFF5817 at 196.667 kb on - strand, within GFF5817 at 196.756 kb on + strand, within GFF5817 at 196.757 kb on - strand, within GFF5817 at 196.804 kb on + strand, within GFF5817 at 196.805 kb on - strand, within GFF5817 at 197.585 kb on + strand, within GFF5817 at 197.585 kb on + strand, within GFF5817 at 197.586 kb on - strand, within GFF5817 at 198.003 kb on + strand, within GFF5818 at 198.003 kb on + strand, within GFF5818 at 198.004 kb on - strand, within GFF5818 at 198.018 kb on + strand, within GFF5818 at 198.019 kb on - strand, within GFF5818 at 198.019 kb on - strand, within GFF5818 at 198.019 kb on - strand, within GFF5818 at 198.339 kb on + strand at 198.468 kb on + strand at 198.469 kb on - strand at 198.501 kb on + strand at 198.596 kb on + strand at 198.597 kb on - strand at 198.597 kb on - strand at 198.635 kb on - strand at 198.683 kb on - strand, within GFF5819
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 195,652 + GFF5816 0.24 +1.8 195,653 - GFF5816 0.25 -1.0 195,653 - GFF5816 0.25 +0.6 195,653 - GFF5816 0.25 -0.2 195,653 - GFF5816 0.25 -1.8 195,653 - GFF5816 0.25 -0.9 195,722 + GFF5816 0.32 +0.4 195,824 + GFF5816 0.44 +0.5 195,965 + GFF5816 0.60 +1.5 196,174 + GFF5816 0.84 -0.3 196,175 - GFF5816 0.84 -0.3 196,357 + -0.7 196,504 + -0.7 196,505 - +1.3 196,505 - -0.9 196,505 - -1.1 196,537 + GFF5817 0.12 -2.5 196,537 + GFF5817 0.12 +0.1 196,537 + GFF5817 0.12 +0.1 196,537 + GFF5817 0.12 -0.9 196,538 - GFF5817 0.12 -2.0 196,538 - GFF5817 0.12 -0.3 196,538 - GFF5817 0.12 +2.3 196,538 - GFF5817 0.12 +0.6 196,538 - GFF5817 0.12 +0.4 196,538 - GFF5817 0.12 -0.9 196,573 + GFF5817 0.15 +0.2 196,573 + GFF5817 0.15 +0.9 196,574 - GFF5817 0.15 +2.3 196,639 + GFF5817 0.19 -0.0 196,666 + GFF5817 0.21 -0.5 196,667 - GFF5817 0.21 +2.3 196,756 + GFF5817 0.28 -1.3 196,757 - GFF5817 0.28 +0.5 196,804 + GFF5817 0.31 +0.3 196,805 - GFF5817 0.32 -0.6 197,585 + GFF5817 0.88 +2.7 197,585 + GFF5817 0.88 -0.8 197,586 - GFF5817 0.88 +2.3 198,003 + GFF5818 0.41 -0.7 198,003 + GFF5818 0.41 +4.0 198,004 - GFF5818 0.41 -3.4 198,018 + GFF5818 0.43 +0.5 198,019 - GFF5818 0.44 -2.4 198,019 - GFF5818 0.44 -0.7 198,019 - GFF5818 0.44 -2.6 198,339 + -0.7 198,468 + -1.5 198,469 - +1.5 198,501 + +0.4 198,596 + +1.3 198,597 - -0.2 198,597 - -0.8 198,635 - +0.8 198,683 - GFF5819 0.25 +0.5
Or see this region's nucleotide sequence