Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5775 and GFF5776 overlap by 41 nucleotides GFF5776 and GFF5777 are separated by 4 nucleotides GFF5777 and GFF5778 are separated by 154 nucleotides
GFF5775 - Glucoamylase (EC 3.2.1.3), at 149,391 to 151,298
GFF5775
GFF5776 - Gluconokinase (EC 2.7.1.12), at 151,258 to 151,803
GFF5776
GFF5777 - 5-keto-D-gluconate 5-reductase (EC 1.1.1.69), at 151,808 to 152,569
GFF5777
GFF5778 - D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95), at 152,724 to 153,677
GFF5778
Position (kb) 151
152
153 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 150.810 kb on + strand, within GFF5775 at 150.813 kb on + strand, within GFF5775 at 150.813 kb on + strand, within GFF5775 at 150.814 kb on - strand, within GFF5775 at 150.928 kb on - strand, within GFF5775 at 150.942 kb on + strand, within GFF5775 at 150.942 kb on + strand, within GFF5775 at 151.029 kb on + strand, within GFF5775 at 151.029 kb on + strand, within GFF5775 at 151.029 kb on + strand, within GFF5775 at 151.029 kb on + strand, within GFF5775 at 151.029 kb on + strand, within GFF5775 at 151.029 kb on + strand, within GFF5775 at 151.030 kb on - strand, within GFF5775 at 151.030 kb on - strand, within GFF5775 at 151.030 kb on - strand, within GFF5775 at 151.119 kb on + strand at 151.120 kb on - strand at 151.120 kb on - strand at 151.120 kb on - strand at 151.357 kb on + strand, within GFF5776 at 151.357 kb on + strand, within GFF5776 at 151.358 kb on - strand, within GFF5776 at 151.358 kb on - strand, within GFF5776 at 151.358 kb on - strand, within GFF5776 at 151.408 kb on + strand, within GFF5776 at 151.427 kb on + strand, within GFF5776 at 151.427 kb on + strand, within GFF5776 at 151.427 kb on + strand, within GFF5776 at 151.427 kb on + strand, within GFF5776 at 151.427 kb on + strand, within GFF5776 at 151.428 kb on - strand, within GFF5776 at 151.428 kb on - strand, within GFF5776 at 151.809 kb on + strand at 151.810 kb on - strand at 151.810 kb on - strand at 151.839 kb on + strand at 151.839 kb on + strand at 151.839 kb on + strand at 151.839 kb on + strand at 151.840 kb on - strand at 151.840 kb on - strand at 151.840 kb on - strand at 151.846 kb on + strand at 152.004 kb on + strand, within GFF5777 at 152.005 kb on - strand, within GFF5777 at 152.005 kb on - strand, within GFF5777 at 152.037 kb on + strand, within GFF5777 at 152.038 kb on - strand, within GFF5777 at 152.038 kb on - strand, within GFF5777 at 152.038 kb on - strand, within GFF5777 at 152.038 kb on - strand, within GFF5777 at 152.101 kb on - strand, within GFF5777 at 152.101 kb on - strand, within GFF5777 at 152.667 kb on + strand at 152.667 kb on + strand at 152.668 kb on - strand at 152.668 kb on - strand at 152.668 kb on - strand at 152.668 kb on - strand at 152.668 kb on - strand at 152.770 kb on - strand at 152.770 kb on - strand at 152.805 kb on + strand at 152.805 kb on + strand at 152.806 kb on - strand at 152.806 kb on - strand at 152.806 kb on - strand at 152.806 kb on - strand at 152.955 kb on + strand, within GFF5778 at 152.956 kb on - strand, within GFF5778 at 152.956 kb on - strand, within GFF5778
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 150,810 + GFF5775 0.74 +0.9 150,813 + GFF5775 0.75 -0.1 150,813 + GFF5775 0.75 +1.0 150,814 - GFF5775 0.75 +2.3 150,928 - GFF5775 0.81 -1.1 150,942 + GFF5775 0.81 +3.3 150,942 + GFF5775 0.81 -0.9 151,029 + GFF5775 0.86 -1.7 151,029 + GFF5775 0.86 -0.4 151,029 + GFF5775 0.86 -0.1 151,029 + GFF5775 0.86 +2.1 151,029 + GFF5775 0.86 +0.8 151,029 + GFF5775 0.86 -1.3 151,030 - GFF5775 0.86 -0.7 151,030 - GFF5775 0.86 +2.1 151,030 - GFF5775 0.86 -0.6 151,119 + -0.3 151,120 - +0.8 151,120 - -1.6 151,120 - -0.2 151,357 + GFF5776 0.18 +2.1 151,357 + GFF5776 0.18 -2.6 151,358 - GFF5776 0.18 +0.7 151,358 - GFF5776 0.18 +2.0 151,358 - GFF5776 0.18 +1.3 151,408 + GFF5776 0.27 -1.9 151,427 + GFF5776 0.31 +4.6 151,427 + GFF5776 0.31 -1.2 151,427 + GFF5776 0.31 +1.6 151,427 + GFF5776 0.31 -0.6 151,427 + GFF5776 0.31 -1.1 151,428 - GFF5776 0.31 -1.9 151,428 - GFF5776 0.31 +0.8 151,809 + -1.7 151,810 - +0.5 151,810 - -0.3 151,839 + +2.3 151,839 + -0.6 151,839 + -2.6 151,839 + +0.3 151,840 - -0.1 151,840 - -2.7 151,840 - +0.3 151,846 + +1.0 152,004 + GFF5777 0.26 -3.4 152,005 - GFF5777 0.26 -1.3 152,005 - GFF5777 0.26 +0.0 152,037 + GFF5777 0.30 -0.8 152,038 - GFF5777 0.30 -1.1 152,038 - GFF5777 0.30 +0.2 152,038 - GFF5777 0.30 -1.6 152,038 - GFF5777 0.30 -0.1 152,101 - GFF5777 0.38 -0.7 152,101 - GFF5777 0.38 +1.4 152,667 + +0.0 152,667 + -1.2 152,668 - +0.4 152,668 - -2.5 152,668 - -1.7 152,668 - -1.3 152,668 - -0.2 152,770 - -0.6 152,770 - +2.7 152,805 + +0.2 152,805 + -2.1 152,806 - -2.2 152,806 - -0.4 152,806 - -2.8 152,806 - +0.3 152,955 + GFF5778 0.24 -2.4 152,956 - GFF5778 0.24 +0.0 152,956 - GFF5778 0.24 -2.7
Or see this region's nucleotide sequence