Strain Fitness in Variovorax sp. SCN45 around GFF5770

Experiment: Community=guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=guar; Passage=4
141,298	+		GFF5769	0.27	+1.3
141,299	-		GFF5769	0.27	-0.2
141,479	-		GFF5769	0.55	-0.9
141,766	+				-0.7
141,833	-				-0.9
141,887	+				-0.3
141,888	-				-1.9
141,888	-				+4.7
141,888	-				+1.0
142,456	+		GFF5770	0.47	-0.7
142,456	+		GFF5770	0.47	+0.2
142,457	-		GFF5770	0.47	-0.4
142,457	-		GFF5770	0.47	-1.8
142,561	+		GFF5770	0.56	+0.2
142,562	-		GFF5770	0.56	-0.1
142,562	-		GFF5770	0.56	-0.0
142,750	+		GFF5770	0.72	+0.9
142,750	+		GFF5770	0.72	+0.9
142,751	-		GFF5770	0.72	+1.3
142,882	+		GFF5770	0.84	-0.9
142,958	-				-1.6
143,002	-				+2.1
143,038	+				+0.3
143,038	+				-0.9
143,039	-				+2.6
143,039	-				-0.9
143,039	-				+0.0
143,259	+				-0.9
143,259	+				-0.9
143,259	+				+1.5
143,259	+				+1.4
143,259	+				+0.3
143,260	-				+1.2
143,260	-				+0.9
143,260	-				-0.1
143,260	-				-0.9
143,260	-				-3.3
143,260	-				+0.8
143,653	-		GFF5771	0.28	-0.6
143,793	+		GFF5771	0.35	-1.1
143,793	+		GFF5771	0.35	-0.6
143,793	+		GFF5771	0.35	-1.4
143,794	-		GFF5771	0.35	-0.6