Strain Fitness in Variovorax sp. SCN45 around GFF5637

Experiment: Community=guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=guar; Passage=4
12,040	+		GFF5635	0.83	-0.7
12,040	+		GFF5635	0.83	-0.1
12,040	+		GFF5635	0.83	-0.3
12,040	+		GFF5635	0.83	+1.1
12,040	+		GFF5635	0.83	-1.2
12,040	+		GFF5635	0.83	+0.4
12,040	+		GFF5635	0.83	+0.1
12,040	+		GFF5635	0.83	-0.9
12,040	+		GFF5635	0.83	-0.1
12,041	-		GFF5635	0.83	+3.3
12,041	-		GFF5635	0.83	-0.0
12,041	-		GFF5635	0.83	-2.7
12,041	-		GFF5635	0.83	-0.1
12,041	-		GFF5635	0.83	+1.0
12,041	-		GFF5635	0.83	-1.8
12,041	-		GFF5635	0.83	-1.2
12,041	-		GFF5635	0.83	-1.3
12,041	-		GFF5635	0.83	+0.9
12,182	+				+0.9
12,184	+				-1.4
12,184	+				-0.7
12,184	+				-0.2
12,184	+				+0.8
12,184	+				-1.3
12,185	-				-0.3
12,185	-				-1.0
12,185	-				-2.8
12,185	-				+1.4
12,185	-				+2.3
12,186	+				-2.7
12,186	+				-0.7
12,186	+				+0.7
12,186	+				-0.2
12,186	+				-0.6
12,187	-				+0.5
12,187	-				+0.0
12,187	-				-1.5
12,187	-				-1.7
12,187	-				+0.9
12,627	+		GFF5636	0.57	-0.6
12,628	-		GFF5636	0.57	+1.8
12,717	+		GFF5636	0.69	+0.7
12,717	+		GFF5636	0.69	+0.5
12,717	+		GFF5636	0.69	-0.6
12,717	+		GFF5636	0.69	-3.1
12,718	-		GFF5636	0.69	+0.7
12,718	-		GFF5636	0.69	+0.9
12,828	+		GFF5636	0.84	-2.5
12,828	+		GFF5636	0.84	+1.0
12,829	-		GFF5636	0.84	+2.2
12,829	-		GFF5636	0.84	-1.8
13,040	+		GFF5637	0.12	+0.3
13,040	+		GFF5637	0.12	+0.7
13,040	+		GFF5637	0.12	-1.1
13,139	+		GFF5637	0.25	+0.1
13,139	+		GFF5637	0.25	-1.3
13,139	+		GFF5637	0.25	-0.7
13,140	-		GFF5637	0.25	-2.3
13,140	-		GFF5637	0.25	+1.5
13,140	-		GFF5637	0.25	+1.0
13,140	-		GFF5637	0.25	-3.0
13,191	-		GFF5637	0.31	+1.4
13,191	-		GFF5637	0.31	+2.3
13,205	+		GFF5637	0.33	+0.5
13,205	+		GFF5637	0.33	-0.4
13,205	+		GFF5637	0.33	+1.8
13,205	+		GFF5637	0.33	+1.0
13,205	+		GFF5637	0.33	-0.2
13,205	+		GFF5637	0.33	-0.3
13,206	-		GFF5637	0.33	+1.9
13,206	-		GFF5637	0.33	-0.9
13,206	-		GFF5637	0.33	+0.2
13,206	-		GFF5637	0.33	+0.1
13,225	+		GFF5637	0.36	-2.1
13,225	+		GFF5637	0.36	-1.4
13,225	+		GFF5637	0.36	+1.4
13,225	+		GFF5637	0.36	+0.2
13,226	-		GFF5637	0.36	+0.1
13,226	-		GFF5637	0.36	+1.3
13,226	-		GFF5637	0.36	-2.4
13,580	+		GFF5637	0.81	+0.3
13,580	+		GFF5637	0.81	-1.0
13,580	+		GFF5637	0.81	+1.2
13,581	-		GFF5637	0.81	+0.5
13,581	-		GFF5637	0.81	-0.1
13,581	-		GFF5637	0.81	-1.3
13,581	-		GFF5637	0.81	-0.2
13,581	-		GFF5637	0.81	+0.4
13,741	+				-0.7
13,749	-				-0.6
13,756	-				-0.7
13,965	+		GFF5638	0.70	+1.3
14,051	+				-0.7
14,051	+				-0.4
14,051	+				+0.5
14,052	-				-2.8
14,052	-				-0.7
14,052	-				-2.2
14,052	-				-1.6
14,163	+		GFF5639	0.37	-0.6
14,163	+		GFF5639	0.37	+1.1
14,163	+		GFF5639	0.37	-0.7
14,164	-		GFF5639	0.38	-0.3
14,164	-		GFF5639	0.38	-2.1
14,164	-		GFF5639	0.38	-0.0
14,276	+		GFF5639	0.73	-0.7
14,276	+		GFF5639	0.73	-0.9
14,276	+		GFF5639	0.73	-0.9
14,276	+		GFF5639	0.73	+0.8
14,276	+		GFF5639	0.73	+1.1
14,276	+		GFF5639	0.73	+0.9
14,276	+		GFF5639	0.73	-2.9
14,277	-		GFF5639	0.74	-0.4
14,277	-		GFF5639	0.74	-1.1
14,277	-		GFF5639	0.74	-2.8
14,277	-		GFF5639	0.74	-2.7
14,295	+		GFF5639	0.79	-3.2
14,295	+		GFF5639	0.79	-0.7
14,295	+		GFF5639	0.79	+0.2
14,296	-		GFF5639	0.80	+0.4
14,351	+				+0.5
14,351	+				-1.8
14,351	+				-1.1
14,352	-				-1.4
14,352	-				-2.7
14,352	-				+0.3
14,434	+				+0.2
14,434	+				+2.4
14,435	-				+1.1
14,507	+				-0.9
14,507	+				+2.3
14,508	-				+1.6
14,508	-				-1.7
14,508	-				+0.4