Strain Fitness in Variovorax sp. SCN45 around GFF5630

Experiment: Community=guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=guar; Passage=4
8,220	+		GFF5629	0.58	+0.4
8,220	+		GFF5629	0.58	-1.1
8,220	+		GFF5629	0.58	-0.3
8,220	+		GFF5629	0.58	+0.8
8,220	+		GFF5629	0.58	+0.8
8,221	-		GFF5629	0.58	-2.6
8,221	-		GFF5629	0.58	+0.7
8,358	+		GFF5629	0.66	+0.6
8,358	+		GFF5629	0.66	-1.2
8,358	+		GFF5629	0.66	+1.4
8,358	+		GFF5629	0.66	-0.4
8,358	+		GFF5629	0.66	+0.8
8,358	+		GFF5629	0.66	+0.6
8,358	+		GFF5629	0.66	-0.6
8,358	+		GFF5629	0.66	-0.4
8,358	+		GFF5629	0.66	+0.5
8,358	+		GFF5629	0.66	-1.4
8,359	-		GFF5629	0.66	+0.0
8,359	-		GFF5629	0.66	-3.2
8,359	-		GFF5629	0.66	+1.2
8,359	-		GFF5629	0.66	+1.3
8,359	-		GFF5629	0.66	-1.1
8,359	-		GFF5629	0.66	+0.3
8,391	+		GFF5629	0.68	-1.9
8,391	+		GFF5629	0.68	-1.9
8,391	+		GFF5629	0.68	+0.5
8,392	-		GFF5629	0.68	-2.5
8,392	-		GFF5629	0.68	-1.3
8,469	+		GFF5629	0.73	+1.3
8,469	+		GFF5629	0.73	-0.7
8,469	+		GFF5629	0.73	-0.1
8,469	+		GFF5629	0.73	+1.0
8,469	+		GFF5629	0.73	-0.2
8,469	+		GFF5629	0.73	-1.7
8,469	+		GFF5629	0.73	+0.3
8,470	-		GFF5629	0.73	-2.3
8,470	-		GFF5629	0.73	+2.8
8,470	-		GFF5629	0.73	-2.4
8,470	-		GFF5629	0.73	-2.1
8,470	-		GFF5629	0.73	+0.5
8,470	-		GFF5629	0.73	+0.4
8,470	-		GFF5629	0.73	-0.3
8,499	+		GFF5629	0.74	-3.0
8,499	+		GFF5629	0.74	-1.5
8,500	-		GFF5629	0.74	+1.7
8,500	-		GFF5629	0.74	-1.3
8,500	-		GFF5629	0.74	+0.3
8,601	+		GFF5629	0.80	-2.1
8,601	+		GFF5629	0.80	+0.3
8,601	+		GFF5629	0.80	+1.0
8,601	+		GFF5629	0.80	-0.4
8,601	+		GFF5629	0.80	-0.8
8,601	+		GFF5629	0.80	+3.0
8,601	+		GFF5629	0.80	+1.1
8,601	+		GFF5629	0.80	+0.8
8,601	+		GFF5629	0.80	-0.3
8,601	+		GFF5629	0.80	+1.5
8,601	+		GFF5629	0.80	-1.3
8,602	-		GFF5629	0.80	+0.7
8,602	-		GFF5629	0.80	-1.5
8,602	-		GFF5629	0.80	-0.7
8,602	-		GFF5629	0.80	-3.5
8,602	-		GFF5629	0.80	-0.8
8,602	-		GFF5629	0.80	-0.7
8,602	-		GFF5629	0.80	-1.7
8,602	-		GFF5629	0.80	-1.3
8,602	-		GFF5629	0.80	-2.7
8,614	-		GFF5629	0.81	-0.4
8,649	+		GFF5629	0.83	-2.0
8,650	-		GFF5629	0.83	+4.2
8,650	-		GFF5629	0.83	+1.2
8,650	-		GFF5629	0.83	-0.1
8,650	-		GFF5629	0.83	-1.3
8,650	-		GFF5629	0.83	-0.7
8,664	+		GFF5629	0.84	+0.2
8,664	+		GFF5629	0.84	+2.8
8,664	+		GFF5629	0.84	+1.8
8,664	+		GFF5629	0.84	-1.1
8,664	+		GFF5629	0.84	+0.6
8,664	+		GFF5629	0.84	+2.0
8,664	+		GFF5629	0.84	-1.0
8,664	+		GFF5629	0.84	+1.3
8,664	+		GFF5629	0.84	-0.4
8,664	+		GFF5629	0.84	+0.7
8,664	+		GFF5629	0.84	-1.1
8,664	+		GFF5629	0.84	-1.9
8,664	+		GFF5629	0.84	-0.2
8,664	+		GFF5629	0.84	+0.0
8,664	+		GFF5629	0.84	+0.4
8,664	+		GFF5629	0.84	-1.9
8,664	+		GFF5629	0.84	-1.0
8,664	+		GFF5629	0.84	-0.7
8,664	+		GFF5629	0.84	+2.0
8,664	+		GFF5629	0.84	+1.1
8,664	+		GFF5629	0.84	+0.6
8,665	-		GFF5629	0.84	+0.3
8,665	-		GFF5629	0.84	+0.3
8,665	-		GFF5629	0.84	+0.5
8,665	-		GFF5629	0.84	+1.0
8,665	-		GFF5629	0.84	+0.8
8,665	-		GFF5629	0.84	-0.8
8,665	-		GFF5629	0.84	+0.1
8,665	-		GFF5629	0.84	+0.1
8,665	-		GFF5629	0.84	-1.9
8,665	-		GFF5629	0.84	+0.4
8,665	-		GFF5629	0.84	+1.1
8,665	-		GFF5629	0.84	-1.2
8,665	-		GFF5629	0.84	-1.9
8,665	-		GFF5629	0.84	+1.6
8,665	-		GFF5629	0.84	+2.1
8,665	-		GFF5629	0.84	-0.7
8,665	-		GFF5629	0.84	-1.7
8,665	-		GFF5629	0.84	+0.2
8,665	-		GFF5629	0.84	-0.3
8,665	-		GFF5629	0.84	-0.6
8,665	-		GFF5629	0.84	+0.7
8,665	-		GFF5629	0.84	-1.1
8,665	-		GFF5629	0.84	-0.9
8,665	-		GFF5629	0.84	-1.8
8,665	-		GFF5629	0.84	-1.0
8,665	-		GFF5629	0.84	-1.9
8,665	-		GFF5629	0.84	-0.4
8,665	-		GFF5629	0.84	-1.3
8,665	-		GFF5629	0.84	-2.2
8,665	-		GFF5629	0.84	-0.4
8,665	-		GFF5629	0.84	+0.3
8,665	-		GFF5629	0.84	+0.7
8,895	+				-1.8
8,895	+				+0.4
8,896	-				-0.2
8,896	-				+0.3
8,896	-				-1.1
8,896	-				-0.7
8,896	-				-0.3
9,083	+		GFF5630	0.23	-0.3
9,083	+		GFF5630	0.23	-1.8
9,084	-		GFF5630	0.23	-1.0
9,084	-		GFF5630	0.23	-0.8
9,176	+		GFF5630	0.39	+2.3
9,176	+		GFF5630	0.39	+0.0
9,176	+		GFF5630	0.39	+0.8
9,176	+		GFF5630	0.39	-1.9
9,176	+		GFF5630	0.39	+3.1
9,177	-		GFF5630	0.39	-2.3
9,177	-		GFF5630	0.39	-1.4
9,177	-		GFF5630	0.39	+1.7
9,177	-		GFF5630	0.39	+1.7
9,177	-		GFF5630	0.39	+0.5
9,177	-		GFF5630	0.39	-0.5
9,177	-		GFF5630	0.39	-0.6
9,177	-		GFF5630	0.39	-0.7
9,177	-		GFF5630	0.39	-0.9
9,177	-		GFF5630	0.39	-1.7
9,177	-		GFF5630	0.39	-1.6
9,266	+		GFF5630	0.55	-0.1
9,266	+		GFF5630	0.55	-1.3
9,266	+		GFF5630	0.55	+1.2
9,266	+		GFF5630	0.55	+0.2
9,266	+		GFF5630	0.55	-0.1
9,266	+		GFF5630	0.55	-0.1
9,266	+		GFF5630	0.55	+0.1
9,266	+		GFF5630	0.55	+0.5
9,266	+		GFF5630	0.55	-2.8
9,266	+		GFF5630	0.55	-0.9
9,267	-		GFF5630	0.55	-2.6
9,267	-		GFF5630	0.55	+1.4
9,267	-		GFF5630	0.55	+0.3
9,267	-		GFF5630	0.55	+0.6
9,267	-		GFF5630	0.55	+0.3
9,267	-		GFF5630	0.55	+0.6
9,267	-		GFF5630	0.55	+0.7
9,267	-		GFF5630	0.55	-0.3
9,267	-		GFF5630	0.55	-1.5
9,563	+				-0.1
9,563	+				-1.7
9,564	-				+1.5
9,564	-				-0.1
9,564	-				+0.2
9,564	-				-1.0
9,625	+				-0.3
9,625	+				-1.9
9,626	-				+2.1
9,626	-				-0.6
9,674	+				-0.6
9,675	-				+0.7
9,779	+		GFF5631	0.40	-0.5
9,779	+		GFF5631	0.40	-0.1
9,780	-		GFF5631	0.40	-0.8
10,159	+		GFF5632	0.35	-0.0
10,159	+		GFF5632	0.35	-1.4
10,159	+		GFF5632	0.35	+1.3
10,159	+		GFF5632	0.35	-0.3
10,160	-		GFF5632	0.35	-2.3
10,160	-		GFF5632	0.35	-0.7
10,160	-		GFF5632	0.35	-1.2
10,160	-		GFF5632	0.35	+0.1
10,381	+		GFF5632	0.80	-0.9
10,381	+		GFF5632	0.80	-1.7
10,381	+		GFF5632	0.80	-3.3
10,381	+		GFF5632	0.80	+1.0
10,381	+		GFF5632	0.80	-1.7
10,381	+		GFF5632	0.80	-0.1
10,381	+		GFF5632	0.80	+0.4
10,381	+		GFF5632	0.80	-1.0
10,381	+		GFF5632	0.80	+0.4
10,382	-		GFF5632	0.80	-2.5
10,382	-		GFF5632	0.80	-1.2
10,382	-		GFF5632	0.80	-1.6
10,382	-		GFF5632	0.80	+0.9
10,382	-		GFF5632	0.80	+0.2
10,382	-		GFF5632	0.80	-0.6
10,382	-		GFF5632	0.80	+0.3
10,382	-		GFF5632	0.80	-1.7