Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5592 and GFF5593 overlap by 4 nucleotides GFF5593 and GFF5594 overlap by 4 nucleotides GFF5594 and GFF5595 are separated by 31 nucleotides
GFF5592 - Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family, at 212,709 to 213,767
GFF5592
GFF5593 - no description, at 213,764 to 214,567
GFF5593
GFF5594 - Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1), at 214,564 to 215,640
GFF5594
GFF5595 - no description, at 215,672 to 216,709
GFF5595
Position (kb) 214
215
216 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 213.809 kb on + strand at 213.908 kb on + strand, within GFF5593 at 213.908 kb on + strand, within GFF5593 at 213.909 kb on - strand, within GFF5593 at 214.016 kb on + strand, within GFF5593 at 214.017 kb on - strand, within GFF5593 at 214.115 kb on + strand, within GFF5593 at 214.115 kb on + strand, within GFF5593 at 214.115 kb on + strand, within GFF5593 at 214.115 kb on + strand, within GFF5593 at 214.115 kb on + strand, within GFF5593 at 214.115 kb on + strand, within GFF5593 at 214.115 kb on + strand, within GFF5593 at 214.116 kb on - strand, within GFF5593 at 214.116 kb on - strand, within GFF5593 at 214.116 kb on - strand, within GFF5593 at 214.116 kb on - strand, within GFF5593 at 214.116 kb on - strand, within GFF5593 at 214.116 kb on - strand, within GFF5593 at 214.116 kb on - strand, within GFF5593 at 214.116 kb on - strand, within GFF5593 at 214.116 kb on - strand, within GFF5593 at 214.116 kb on - strand, within GFF5593 at 214.448 kb on + strand, within GFF5593 at 214.448 kb on + strand, within GFF5593 at 214.448 kb on + strand, within GFF5593 at 214.448 kb on + strand, within GFF5593 at 214.448 kb on + strand, within GFF5593 at 214.448 kb on + strand, within GFF5593 at 214.448 kb on + strand, within GFF5593 at 214.449 kb on - strand, within GFF5593 at 214.449 kb on - strand, within GFF5593 at 214.449 kb on - strand, within GFF5593 at 214.570 kb on + strand at 214.570 kb on + strand at 214.570 kb on + strand at 214.570 kb on + strand at 214.571 kb on - strand at 214.571 kb on - strand at 214.571 kb on - strand at 214.571 kb on - strand at 214.571 kb on - strand at 214.571 kb on - strand at 214.600 kb on + strand at 214.601 kb on - strand at 214.601 kb on - strand at 214.814 kb on - strand, within GFF5594 at 214.814 kb on - strand, within GFF5594 at 215.227 kb on + strand, within GFF5594 at 215.227 kb on + strand, within GFF5594 at 215.227 kb on + strand, within GFF5594 at 215.227 kb on + strand, within GFF5594 at 215.227 kb on + strand, within GFF5594 at 215.227 kb on + strand, within GFF5594 at 215.228 kb on - strand, within GFF5594 at 215.228 kb on - strand, within GFF5594 at 215.260 kb on + strand, within GFF5594 at 215.461 kb on + strand, within GFF5594 at 215.461 kb on + strand, within GFF5594 at 215.461 kb on + strand, within GFF5594 at 215.461 kb on + strand, within GFF5594 at 215.462 kb on - strand, within GFF5594 at 215.462 kb on - strand, within GFF5594 at 215.462 kb on - strand, within GFF5594 at 215.795 kb on + strand, within GFF5595 at 216.071 kb on + strand, within GFF5595 at 216.072 kb on - strand, within GFF5595 at 216.072 kb on - strand, within GFF5595 at 216.092 kb on + strand, within GFF5595 at 216.092 kb on + strand, within GFF5595 at 216.092 kb on + strand, within GFF5595 at 216.092 kb on + strand, within GFF5595 at 216.092 kb on + strand, within GFF5595 at 216.093 kb on - strand, within GFF5595 at 216.093 kb on - strand, within GFF5595 at 216.093 kb on - strand, within GFF5595 at 216.152 kb on + strand, within GFF5595 at 216.152 kb on + strand, within GFF5595 at 216.152 kb on + strand, within GFF5595 at 216.153 kb on - strand, within GFF5595 at 216.153 kb on - strand, within GFF5595 at 216.153 kb on - strand, within GFF5595 at 216.191 kb on + strand, within GFF5595 at 216.191 kb on + strand, within GFF5595 at 216.192 kb on - strand, within GFF5595 at 216.192 kb on - strand, within GFF5595 at 216.192 kb on - strand, within GFF5595 at 216.371 kb on + strand, within GFF5595 at 216.492 kb on - strand, within GFF5595 at 216.492 kb on - strand, within GFF5595 at 216.548 kb on + strand, within GFF5595 at 216.548 kb on + strand, within GFF5595 at 216.548 kb on + strand, within GFF5595 at 216.549 kb on - strand, within GFF5595 at 216.549 kb on - strand, within GFF5595
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 213,809 + -1.1 213,908 + GFF5593 0.18 -1.4 213,908 + GFF5593 0.18 -1.3 213,909 - GFF5593 0.18 -1.9 214,016 + GFF5593 0.31 -2.1 214,017 - GFF5593 0.31 -0.6 214,115 + GFF5593 0.44 -1.1 214,115 + GFF5593 0.44 +0.0 214,115 + GFF5593 0.44 +2.2 214,115 + GFF5593 0.44 -0.4 214,115 + GFF5593 0.44 -0.4 214,115 + GFF5593 0.44 -1.0 214,115 + GFF5593 0.44 -1.9 214,116 - GFF5593 0.44 -0.9 214,116 - GFF5593 0.44 -0.4 214,116 - GFF5593 0.44 +0.1 214,116 - GFF5593 0.44 -1.1 214,116 - GFF5593 0.44 +1.5 214,116 - GFF5593 0.44 -1.3 214,116 - GFF5593 0.44 -2.0 214,116 - GFF5593 0.44 -0.9 214,116 - GFF5593 0.44 +0.9 214,116 - GFF5593 0.44 -0.7 214,448 + GFF5593 0.85 +0.3 214,448 + GFF5593 0.85 -0.3 214,448 + GFF5593 0.85 +1.4 214,448 + GFF5593 0.85 -0.5 214,448 + GFF5593 0.85 -2.4 214,448 + GFF5593 0.85 -1.1 214,448 + GFF5593 0.85 -2.5 214,449 - GFF5593 0.85 +0.1 214,449 - GFF5593 0.85 -2.6 214,449 - GFF5593 0.85 -0.1 214,570 + +0.7 214,570 + -2.0 214,570 + -2.5 214,570 + -1.9 214,571 - +0.8 214,571 - +0.6 214,571 - -0.5 214,571 - -0.7 214,571 - +1.9 214,571 - +1.8 214,600 + +1.1 214,601 - -1.0 214,601 - +0.5 214,814 - GFF5594 0.23 -1.9 214,814 - GFF5594 0.23 -0.3 215,227 + GFF5594 0.62 +1.0 215,227 + GFF5594 0.62 +0.2 215,227 + GFF5594 0.62 +0.3 215,227 + GFF5594 0.62 +0.9 215,227 + GFF5594 0.62 -1.1 215,227 + GFF5594 0.62 -1.6 215,228 - GFF5594 0.62 +1.3 215,228 - GFF5594 0.62 -1.0 215,260 + GFF5594 0.65 +0.5 215,461 + GFF5594 0.83 +0.4 215,461 + GFF5594 0.83 +0.4 215,461 + GFF5594 0.83 -0.8 215,461 + GFF5594 0.83 -0.5 215,462 - GFF5594 0.83 -0.3 215,462 - GFF5594 0.83 +0.0 215,462 - GFF5594 0.83 +0.1 215,795 + GFF5595 0.12 +0.0 216,071 + GFF5595 0.38 -1.7 216,072 - GFF5595 0.39 +0.2 216,072 - GFF5595 0.39 -1.4 216,092 + GFF5595 0.40 -1.9 216,092 + GFF5595 0.40 -0.1 216,092 + GFF5595 0.40 -0.5 216,092 + GFF5595 0.40 -1.5 216,092 + GFF5595 0.40 -0.5 216,093 - GFF5595 0.41 +1.5 216,093 - GFF5595 0.41 +1.2 216,093 - GFF5595 0.41 -0.1 216,152 + GFF5595 0.46 +1.3 216,152 + GFF5595 0.46 -0.9 216,152 + GFF5595 0.46 +1.2 216,153 - GFF5595 0.46 -3.8 216,153 - GFF5595 0.46 -1.4 216,153 - GFF5595 0.46 -0.9 216,191 + GFF5595 0.50 -0.8 216,191 + GFF5595 0.50 +1.3 216,192 - GFF5595 0.50 +1.2 216,192 - GFF5595 0.50 +0.2 216,192 - GFF5595 0.50 -1.4 216,371 + GFF5595 0.67 -0.8 216,492 - GFF5595 0.79 -1.4 216,492 - GFF5595 0.79 -0.7 216,548 + GFF5595 0.84 +1.3 216,548 + GFF5595 0.84 +0.2 216,548 + GFF5595 0.84 +2.2 216,549 - GFF5595 0.84 -2.4 216,549 - GFF5595 0.84 -1.7
Or see this region's nucleotide sequence