Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5333 and GFF5334 are separated by 101 nucleotides GFF5334 and GFF5335 overlap by 4 nucleotides GFF5335 and GFF5336 are separated by 38 nucleotides GFF5336 and GFF5337 are separated by 35 nucleotides
GFF5333 - Glutamate synthase [NADPH] small chain (EC 1.4.1.13), at 213,855 to 215,333
GFF5333
GFF5334 - Phospholipid ABC transporter ATP-binding protein MlaF, at 215,435 to 216,262
GFF5334
GFF5335 - Phospholipid ABC transporter permease protein MlaE, at 216,259 to 217,041
GFF5335
GFF5336 - Phospholipid ABC transporter substrate-binding protein MlaD, at 217,080 to 217,571
GFF5336
GFF5337 - Outer-membrane-phospholipid-binding lipoprotein MlaA, at 217,607 to 218,314
GFF5337
Position (kb) 216
217
218 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 215.466 kb on + strand at 215.466 kb on + strand at 215.466 kb on + strand at 215.467 kb on - strand at 215.467 kb on - strand at 215.681 kb on + strand, within GFF5334 at 215.681 kb on + strand, within GFF5334 at 215.682 kb on - strand, within GFF5334 at 215.942 kb on + strand, within GFF5334 at 215.942 kb on + strand, within GFF5334 at 215.942 kb on + strand, within GFF5334 at 215.942 kb on + strand, within GFF5334 at 215.943 kb on - strand, within GFF5334 at 215.943 kb on - strand, within GFF5334 at 215.943 kb on - strand, within GFF5334 at 215.943 kb on - strand, within GFF5334 at 215.943 kb on - strand, within GFF5334 at 215.943 kb on - strand, within GFF5334 at 215.943 kb on - strand, within GFF5334 at 215.943 kb on - strand, within GFF5334 at 215.943 kb on - strand, within GFF5334 at 216.323 kb on - strand at 216.418 kb on + strand, within GFF5335 at 216.418 kb on + strand, within GFF5335 at 216.418 kb on + strand, within GFF5335 at 216.418 kb on + strand, within GFF5335 at 216.418 kb on + strand, within GFF5335 at 216.419 kb on - strand, within GFF5335 at 216.419 kb on - strand, within GFF5335 at 216.419 kb on - strand, within GFF5335 at 216.419 kb on - strand, within GFF5335 at 216.428 kb on + strand, within GFF5335 at 216.481 kb on + strand, within GFF5335 at 216.481 kb on + strand, within GFF5335 at 216.481 kb on + strand, within GFF5335 at 216.481 kb on + strand, within GFF5335 at 216.481 kb on + strand, within GFF5335 at 216.481 kb on + strand, within GFF5335 at 216.481 kb on + strand, within GFF5335 at 216.481 kb on + strand, within GFF5335 at 216.481 kb on + strand, within GFF5335 at 216.481 kb on + strand, within GFF5335 at 216.481 kb on + strand, within GFF5335 at 216.481 kb on + strand, within GFF5335 at 216.481 kb on + strand, within GFF5335 at 216.481 kb on + strand, within GFF5335 at 216.482 kb on - strand, within GFF5335 at 216.482 kb on - strand, within GFF5335 at 216.482 kb on - strand, within GFF5335 at 216.482 kb on - strand, within GFF5335 at 216.482 kb on - strand, within GFF5335 at 216.482 kb on - strand, within GFF5335 at 216.482 kb on - strand, within GFF5335 at 216.482 kb on - strand, within GFF5335 at 216.482 kb on - strand, within GFF5335 at 216.482 kb on - strand, within GFF5335 at 216.484 kb on + strand, within GFF5335 at 216.484 kb on + strand, within GFF5335 at 216.484 kb on + strand, within GFF5335 at 216.484 kb on + strand, within GFF5335 at 216.484 kb on + strand, within GFF5335 at 216.485 kb on - strand, within GFF5335 at 216.485 kb on - strand, within GFF5335 at 216.485 kb on - strand, within GFF5335 at 216.485 kb on - strand, within GFF5335 at 216.499 kb on + strand, within GFF5335 at 216.500 kb on - strand, within GFF5335 at 216.598 kb on - strand, within GFF5335 at 216.770 kb on - strand, within GFF5335 at 216.770 kb on - strand, within GFF5335 at 216.770 kb on - strand, within GFF5335 at 216.770 kb on - strand, within GFF5335 at 216.922 kb on + strand, within GFF5335 at 216.922 kb on + strand, within GFF5335 at 216.922 kb on + strand, within GFF5335 at 216.922 kb on + strand, within GFF5335 at 216.922 kb on + strand, within GFF5335 at 216.923 kb on - strand, within GFF5335 at 216.923 kb on - strand, within GFF5335 at 216.923 kb on - strand, within GFF5335 at 216.923 kb on - strand, within GFF5335 at 217.035 kb on + strand at 217.036 kb on - strand at 217.036 kb on - strand at 217.036 kb on - strand at 217.039 kb on + strand at 217.039 kb on + strand at 217.039 kb on + strand at 217.040 kb on - strand at 217.040 kb on - strand at 217.040 kb on - strand at 217.040 kb on - strand at 217.040 kb on - strand at 217.040 kb on - strand at 217.040 kb on - strand at 217.040 kb on - strand at 217.040 kb on - strand at 217.040 kb on - strand at 217.040 kb on - strand at 217.065 kb on + strand at 217.197 kb on + strand, within GFF5336 at 217.197 kb on + strand, within GFF5336 at 217.197 kb on + strand, within GFF5336 at 217.198 kb on - strand, within GFF5336 at 217.198 kb on - strand, within GFF5336 at 217.198 kb on - strand, within GFF5336 at 217.198 kb on - strand, within GFF5336 at 217.347 kb on + strand, within GFF5336 at 217.348 kb on - strand, within GFF5336 at 217.348 kb on - strand, within GFF5336 at 217.407 kb on + strand, within GFF5336 at 217.407 kb on + strand, within GFF5336 at 217.407 kb on + strand, within GFF5336 at 217.407 kb on + strand, within GFF5336 at 217.407 kb on + strand, within GFF5336 at 217.407 kb on + strand, within GFF5336 at 217.407 kb on + strand, within GFF5336 at 217.407 kb on + strand, within GFF5336 at 217.407 kb on + strand, within GFF5336 at 217.408 kb on - strand, within GFF5336 at 217.408 kb on - strand, within GFF5336 at 217.408 kb on - strand, within GFF5336 at 217.408 kb on - strand, within GFF5336 at 217.408 kb on - strand, within GFF5336 at 217.408 kb on - strand, within GFF5336 at 217.408 kb on - strand, within GFF5336 at 217.408 kb on - strand, within GFF5336 at 217.408 kb on - strand, within GFF5336 at 217.408 kb on - strand, within GFF5336 at 217.408 kb on - strand, within GFF5336 at 217.515 kb on + strand, within GFF5336 at 217.515 kb on + strand, within GFF5336 at 217.515 kb on + strand, within GFF5336 at 217.516 kb on - strand, within GFF5336 at 217.516 kb on - strand, within GFF5336 at 217.516 kb on - strand, within GFF5336 at 217.516 kb on - strand, within GFF5336 at 217.516 kb on - strand, within GFF5336 at 217.516 kb on - strand, within GFF5336 at 217.535 kb on + strand at 217.535 kb on + strand at 217.535 kb on + strand at 217.535 kb on + strand at 217.535 kb on + strand at 217.535 kb on + strand at 217.536 kb on - strand at 217.536 kb on - strand at 217.536 kb on - strand at 217.536 kb on - strand at 217.536 kb on - strand at 217.536 kb on - strand at 217.536 kb on - strand at 217.538 kb on + strand at 217.538 kb on + strand at 217.538 kb on + strand at 217.538 kb on + strand at 217.538 kb on + strand at 217.538 kb on + strand at 217.538 kb on + strand at 217.538 kb on + strand at 217.538 kb on + strand at 217.538 kb on + strand at 217.538 kb on + strand at 217.539 kb on - strand at 217.539 kb on - strand at 217.539 kb on - strand at 217.539 kb on - strand at 217.539 kb on - strand at 217.539 kb on - strand at 217.539 kb on - strand at 217.539 kb on - strand at 217.539 kb on - strand at 217.539 kb on - strand at 217.539 kb on - strand at 217.539 kb on - strand at 217.539 kb on - strand at 217.539 kb on - strand at 217.539 kb on - strand at 217.539 kb on - strand at 217.585 kb on + strand at 217.586 kb on - strand at 217.620 kb on + strand at 217.620 kb on + strand at 217.620 kb on + strand at 217.620 kb on + strand at 217.620 kb on + strand at 217.621 kb on - strand at 217.621 kb on - strand at 217.621 kb on - strand at 217.621 kb on - strand at 217.788 kb on + strand, within GFF5337 at 217.788 kb on + strand, within GFF5337 at 217.788 kb on + strand, within GFF5337 at 217.788 kb on + strand, within GFF5337 at 217.788 kb on + strand, within GFF5337 at 217.788 kb on + strand, within GFF5337 at 217.788 kb on + strand, within GFF5337 at 217.788 kb on + strand, within GFF5337 at 217.788 kb on + strand, within GFF5337 at 217.789 kb on - strand, within GFF5337 at 217.789 kb on - strand, within GFF5337 at 217.789 kb on - strand, within GFF5337 at 217.789 kb on - strand, within GFF5337 at 217.789 kb on - strand, within GFF5337 at 217.789 kb on - strand, within GFF5337 at 217.789 kb on - strand, within GFF5337 at 217.789 kb on - strand, within GFF5337 at 217.807 kb on + strand, within GFF5337 at 218.034 kb on - strand, within GFF5337
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 215,466 + -0.3 215,466 + -1.2 215,466 + -0.7 215,467 - -2.1 215,467 - +1.4 215,681 + GFF5334 0.30 -0.4 215,681 + GFF5334 0.30 +0.3 215,682 - GFF5334 0.30 +2.2 215,942 + GFF5334 0.61 -0.1 215,942 + GFF5334 0.61 -0.8 215,942 + GFF5334 0.61 -1.6 215,942 + GFF5334 0.61 +0.1 215,943 - GFF5334 0.61 -3.5 215,943 - GFF5334 0.61 -2.3 215,943 - GFF5334 0.61 -1.2 215,943 - GFF5334 0.61 -0.1 215,943 - GFF5334 0.61 -1.7 215,943 - GFF5334 0.61 -1.4 215,943 - GFF5334 0.61 +0.2 215,943 - GFF5334 0.61 +0.1 215,943 - GFF5334 0.61 -0.8 216,323 - -1.0 216,418 + GFF5335 0.20 -1.7 216,418 + GFF5335 0.20 +0.2 216,418 + GFF5335 0.20 +1.3 216,418 + GFF5335 0.20 -2.9 216,418 + GFF5335 0.20 -0.6 216,419 - GFF5335 0.20 +0.5 216,419 - GFF5335 0.20 +0.4 216,419 - GFF5335 0.20 -1.9 216,419 - GFF5335 0.20 +0.4 216,428 + GFF5335 0.22 -2.7 216,481 + GFF5335 0.28 +2.2 216,481 + GFF5335 0.28 -0.8 216,481 + GFF5335 0.28 +0.5 216,481 + GFF5335 0.28 -2.5 216,481 + GFF5335 0.28 -1.1 216,481 + GFF5335 0.28 +1.2 216,481 + GFF5335 0.28 -1.5 216,481 + GFF5335 0.28 -2.3 216,481 + GFF5335 0.28 +1.2 216,481 + GFF5335 0.28 -0.4 216,481 + GFF5335 0.28 +0.0 216,481 + GFF5335 0.28 -1.8 216,481 + GFF5335 0.28 -1.8 216,481 + GFF5335 0.28 -0.1 216,482 - GFF5335 0.28 +3.4 216,482 - GFF5335 0.28 -1.7 216,482 - GFF5335 0.28 +0.2 216,482 - GFF5335 0.28 +0.8 216,482 - GFF5335 0.28 -1.0 216,482 - GFF5335 0.28 -0.1 216,482 - GFF5335 0.28 +0.2 216,482 - GFF5335 0.28 -3.2 216,482 - GFF5335 0.28 -0.1 216,482 - GFF5335 0.28 +1.2 216,484 + GFF5335 0.29 -0.4 216,484 + GFF5335 0.29 -3.2 216,484 + GFF5335 0.29 -1.1 216,484 + GFF5335 0.29 +0.1 216,484 + GFF5335 0.29 +0.4 216,485 - GFF5335 0.29 -1.0 216,485 - GFF5335 0.29 -2.1 216,485 - GFF5335 0.29 -0.1 216,485 - GFF5335 0.29 +1.2 216,499 + GFF5335 0.31 +2.2 216,500 - GFF5335 0.31 +0.7 216,598 - GFF5335 0.43 -1.9 216,770 - GFF5335 0.65 -0.3 216,770 - GFF5335 0.65 -1.3 216,770 - GFF5335 0.65 +0.7 216,770 - GFF5335 0.65 +0.0 216,922 + GFF5335 0.85 -2.4 216,922 + GFF5335 0.85 -2.9 216,922 + GFF5335 0.85 -1.0 216,922 + GFF5335 0.85 -2.0 216,922 + GFF5335 0.85 -0.8 216,923 - GFF5335 0.85 -0.4 216,923 - GFF5335 0.85 -1.0 216,923 - GFF5335 0.85 -0.2 216,923 - GFF5335 0.85 -2.4 217,035 + -0.2 217,036 - +1.6 217,036 - -0.4 217,036 - -0.8 217,039 + -2.6 217,039 + -1.1 217,039 + +1.8 217,040 - +2.8 217,040 - -0.6 217,040 - +0.9 217,040 - +0.2 217,040 - +0.2 217,040 - -1.8 217,040 - +1.1 217,040 - +0.4 217,040 - +1.7 217,040 - -1.7 217,040 - -2.5 217,065 + +0.0 217,197 + GFF5336 0.24 +1.0 217,197 + GFF5336 0.24 -2.2 217,197 + GFF5336 0.24 +1.7 217,198 - GFF5336 0.24 -0.4 217,198 - GFF5336 0.24 +1.2 217,198 - GFF5336 0.24 -3.6 217,198 - GFF5336 0.24 -1.6 217,347 + GFF5336 0.54 -0.5 217,348 - GFF5336 0.54 +0.4 217,348 - GFF5336 0.54 +2.2 217,407 + GFF5336 0.66 -1.8 217,407 + GFF5336 0.66 +1.5 217,407 + GFF5336 0.66 -0.3 217,407 + GFF5336 0.66 -0.6 217,407 + GFF5336 0.66 -0.4 217,407 + GFF5336 0.66 +1.6 217,407 + GFF5336 0.66 -1.4 217,407 + GFF5336 0.66 -1.5 217,407 + GFF5336 0.66 -1.0 217,408 - GFF5336 0.67 +0.6 217,408 - GFF5336 0.67 -0.3 217,408 - GFF5336 0.67 -2.1 217,408 - GFF5336 0.67 -1.0 217,408 - GFF5336 0.67 +0.1 217,408 - GFF5336 0.67 -1.5 217,408 - GFF5336 0.67 -0.6 217,408 - GFF5336 0.67 +1.2 217,408 - GFF5336 0.67 +0.6 217,408 - GFF5336 0.67 -1.4 217,408 - GFF5336 0.67 +0.2 217,515 + GFF5336 0.88 +0.6 217,515 + GFF5336 0.88 +1.5 217,515 + GFF5336 0.88 -2.6 217,516 - GFF5336 0.89 +1.7 217,516 - GFF5336 0.89 -0.4 217,516 - GFF5336 0.89 -2.7 217,516 - GFF5336 0.89 +0.8 217,516 - GFF5336 0.89 -0.5 217,516 - GFF5336 0.89 -0.7 217,535 + -0.6 217,535 + -1.4 217,535 + +0.8 217,535 + -0.6 217,535 + -0.1 217,535 + -0.8 217,536 - -0.3 217,536 - -0.1 217,536 - -1.1 217,536 - -0.8 217,536 - -0.1 217,536 - -1.1 217,536 - +0.7 217,538 + +0.0 217,538 + +0.2 217,538 + -3.6 217,538 + -1.9 217,538 + -1.0 217,538 + -0.1 217,538 + -0.6 217,538 + -0.3 217,538 + +0.5 217,538 + -2.0 217,538 + -2.5 217,539 - +1.2 217,539 - -0.2 217,539 - -0.9 217,539 - +0.7 217,539 - -0.4 217,539 - -0.1 217,539 - +0.6 217,539 - -0.8 217,539 - -2.2 217,539 - +0.9 217,539 - -1.7 217,539 - -1.0 217,539 - +0.0 217,539 - +1.0 217,539 - -2.2 217,539 - +0.9 217,585 + -0.1 217,586 - -1.0 217,620 + -1.4 217,620 + -1.3 217,620 + +0.2 217,620 + -0.6 217,620 + -1.1 217,621 - +0.7 217,621 - +0.6 217,621 - -0.5 217,621 - -0.4 217,788 + GFF5337 0.26 -0.1 217,788 + GFF5337 0.26 +0.7 217,788 + GFF5337 0.26 +2.4 217,788 + GFF5337 0.26 -1.0 217,788 + GFF5337 0.26 -1.5 217,788 + GFF5337 0.26 -0.8 217,788 + GFF5337 0.26 -0.1 217,788 + GFF5337 0.26 +0.9 217,788 + GFF5337 0.26 +0.6 217,789 - GFF5337 0.26 -3.2 217,789 - GFF5337 0.26 -0.3 217,789 - GFF5337 0.26 -1.0 217,789 - GFF5337 0.26 -0.3 217,789 - GFF5337 0.26 -1.2 217,789 - GFF5337 0.26 +1.6 217,789 - GFF5337 0.26 -0.1 217,789 - GFF5337 0.26 +0.0 217,807 + GFF5337 0.28 +0.2 218,034 - GFF5337 0.60 -0.8
Or see this region's nucleotide sequence