Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5225 and GFF5226 overlap by 4 nucleotides GFF5226 and GFF5227 are separated by 14 nucleotides GFF5227 and GFF5228 are separated by 12 nucleotides
GFF5225 - hypothetical protein, at 88,635 to 88,823
GFF5225
GFF5226 - Probable cytochrome c2, at 88,820 to 89,536
GFF5226
GFF5227 - Putative diheme cytochrome c-553, at 89,551 to 90,837
GFF5227
GFF5228 - Arachidonate 15-lipoxygenase precursor (EC 1.13.11.33), at 90,850 to 92,859
GFF5228
Position (kb) 89
90
91 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 88.566 kb on - strand at 88.566 kb on - strand at 88.566 kb on - strand at 89.021 kb on + strand, within GFF5226 at 89.081 kb on + strand, within GFF5226 at 89.081 kb on + strand, within GFF5226 at 89.081 kb on + strand, within GFF5226 at 89.082 kb on - strand, within GFF5226 at 89.082 kb on - strand, within GFF5226 at 89.082 kb on - strand, within GFF5226 at 89.082 kb on - strand, within GFF5226 at 89.082 kb on - strand, within GFF5226 at 89.130 kb on - strand, within GFF5226 at 89.153 kb on + strand, within GFF5226 at 89.153 kb on + strand, within GFF5226 at 89.327 kb on + strand, within GFF5226 at 89.328 kb on - strand, within GFF5226 at 89.328 kb on - strand, within GFF5226 at 89.714 kb on - strand, within GFF5227 at 89.714 kb on - strand, within GFF5227 at 89.771 kb on - strand, within GFF5227 at 89.812 kb on + strand, within GFF5227 at 89.812 kb on + strand, within GFF5227 at 89.812 kb on + strand, within GFF5227 at 89.812 kb on + strand, within GFF5227 at 89.813 kb on - strand, within GFF5227 at 89.980 kb on + strand, within GFF5227 at 89.981 kb on - strand, within GFF5227 at 89.981 kb on - strand, within GFF5227 at 89.981 kb on - strand, within GFF5227 at 89.986 kb on + strand, within GFF5227 at 89.986 kb on + strand, within GFF5227 at 89.987 kb on - strand, within GFF5227 at 90.148 kb on + strand, within GFF5227 at 90.148 kb on + strand, within GFF5227 at 90.262 kb on + strand, within GFF5227 at 90.263 kb on - strand, within GFF5227 at 90.407 kb on - strand, within GFF5227 at 90.442 kb on + strand, within GFF5227 at 90.545 kb on - strand, within GFF5227 at 90.545 kb on - strand, within GFF5227 at 90.772 kb on + strand at 90.772 kb on + strand at 90.772 kb on + strand at 91.040 kb on + strand at 91.041 kb on - strand at 91.041 kb on - strand at 91.061 kb on + strand, within GFF5228 at 91.062 kb on - strand, within GFF5228 at 91.062 kb on - strand, within GFF5228 at 91.062 kb on - strand, within GFF5228 at 91.205 kb on + strand, within GFF5228 at 91.205 kb on + strand, within GFF5228 at 91.205 kb on + strand, within GFF5228 at 91.205 kb on + strand, within GFF5228 at 91.205 kb on + strand, within GFF5228 at 91.205 kb on + strand, within GFF5228 at 91.205 kb on + strand, within GFF5228 at 91.205 kb on + strand, within GFF5228 at 91.205 kb on + strand, within GFF5228 at 91.205 kb on + strand, within GFF5228 at 91.205 kb on + strand, within GFF5228 at 91.205 kb on + strand, within GFF5228 at 91.205 kb on + strand, within GFF5228 at 91.205 kb on + strand, within GFF5228 at 91.206 kb on - strand, within GFF5228 at 91.206 kb on - strand, within GFF5228 at 91.206 kb on - strand, within GFF5228 at 91.206 kb on - strand, within GFF5228 at 91.206 kb on - strand, within GFF5228 at 91.206 kb on - strand, within GFF5228 at 91.206 kb on - strand, within GFF5228 at 91.206 kb on - strand, within GFF5228 at 91.206 kb on - strand, within GFF5228 at 91.206 kb on - strand, within GFF5228 at 91.206 kb on - strand, within GFF5228 at 91.206 kb on - strand, within GFF5228 at 91.206 kb on - strand, within GFF5228 at 91.221 kb on - strand, within GFF5228 at 91.400 kb on + strand, within GFF5228 at 91.400 kb on + strand, within GFF5228 at 91.401 kb on - strand, within GFF5228 at 91.401 kb on - strand, within GFF5228 at 91.404 kb on - strand, within GFF5228 at 91.404 kb on - strand, within GFF5228 at 91.404 kb on - strand, within GFF5228 at 91.415 kb on + strand, within GFF5228 at 91.476 kb on - strand, within GFF5228 at 91.545 kb on - strand, within GFF5228 at 91.800 kb on - strand, within GFF5228 at 91.800 kb on - strand, within GFF5228
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 88,566 - +1.0 88,566 - -1.1 88,566 - -1.1 89,021 + GFF5226 0.28 +0.6 89,081 + GFF5226 0.36 -0.9 89,081 + GFF5226 0.36 -0.3 89,081 + GFF5226 0.36 -0.4 89,082 - GFF5226 0.37 +0.7 89,082 - GFF5226 0.37 +1.3 89,082 - GFF5226 0.37 +2.0 89,082 - GFF5226 0.37 -1.2 89,082 - GFF5226 0.37 +1.3 89,130 - GFF5226 0.43 -2.6 89,153 + GFF5226 0.46 +0.3 89,153 + GFF5226 0.46 -2.8 89,327 + GFF5226 0.71 +1.7 89,328 - GFF5226 0.71 +0.4 89,328 - GFF5226 0.71 -0.2 89,714 - GFF5227 0.13 -0.9 89,714 - GFF5227 0.13 -0.4 89,771 - GFF5227 0.17 +1.4 89,812 + GFF5227 0.20 +0.5 89,812 + GFF5227 0.20 -1.8 89,812 + GFF5227 0.20 +0.3 89,812 + GFF5227 0.20 -1.8 89,813 - GFF5227 0.20 +0.0 89,980 + GFF5227 0.33 -2.0 89,981 - GFF5227 0.33 +0.2 89,981 - GFF5227 0.33 -0.4 89,981 - GFF5227 0.33 -3.9 89,986 + GFF5227 0.34 -0.5 89,986 + GFF5227 0.34 +1.8 89,987 - GFF5227 0.34 -0.4 90,148 + GFF5227 0.46 +0.1 90,148 + GFF5227 0.46 -1.2 90,262 + GFF5227 0.55 -1.0 90,263 - GFF5227 0.55 -4.2 90,407 - GFF5227 0.67 -0.4 90,442 + GFF5227 0.69 -0.1 90,545 - GFF5227 0.77 -2.2 90,545 - GFF5227 0.77 -1.6 90,772 + -1.4 90,772 + +2.0 90,772 + +0.5 91,040 + -0.7 91,041 - -0.7 91,041 - +1.3 91,061 + GFF5228 0.10 +0.4 91,062 - GFF5228 0.11 +0.7 91,062 - GFF5228 0.11 +0.0 91,062 - GFF5228 0.11 -0.9 91,205 + GFF5228 0.18 +0.7 91,205 + GFF5228 0.18 -1.1 91,205 + GFF5228 0.18 -2.0 91,205 + GFF5228 0.18 +1.9 91,205 + GFF5228 0.18 +0.4 91,205 + GFF5228 0.18 +1.1 91,205 + GFF5228 0.18 -1.1 91,205 + GFF5228 0.18 +0.0 91,205 + GFF5228 0.18 -0.4 91,205 + GFF5228 0.18 -2.0 91,205 + GFF5228 0.18 -2.3 91,205 + GFF5228 0.18 -0.6 91,205 + GFF5228 0.18 +0.2 91,205 + GFF5228 0.18 -0.3 91,206 - GFF5228 0.18 -0.6 91,206 - GFF5228 0.18 +1.8 91,206 - GFF5228 0.18 +1.2 91,206 - GFF5228 0.18 -2.3 91,206 - GFF5228 0.18 +0.2 91,206 - GFF5228 0.18 -1.7 91,206 - GFF5228 0.18 +0.2 91,206 - GFF5228 0.18 -3.0 91,206 - GFF5228 0.18 +0.4 91,206 - GFF5228 0.18 -0.7 91,206 - GFF5228 0.18 -0.6 91,206 - GFF5228 0.18 -2.2 91,206 - GFF5228 0.18 -0.3 91,221 - GFF5228 0.18 +0.4 91,400 + GFF5228 0.27 -1.6 91,400 + GFF5228 0.27 +0.6 91,401 - GFF5228 0.27 +0.2 91,401 - GFF5228 0.27 -0.1 91,404 - GFF5228 0.28 +0.6 91,404 - GFF5228 0.28 -1.6 91,404 - GFF5228 0.28 -0.3 91,415 + GFF5228 0.28 +0.6 91,476 - GFF5228 0.31 +0.5 91,545 - GFF5228 0.35 +2.0 91,800 - GFF5228 0.47 -0.1 91,800 - GFF5228 0.47 -0.2
Or see this region's nucleotide sequence