Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5192 and GFF5193 are separated by 41 nucleotides GFF5193 and GFF5194 are separated by 12 nucleotides
GFF5192 - 2-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26), at 50,197 to 51,663
GFF5192
GFF5193 - Galactofuranose ABC transporter, substrate-binding protein, at 51,705 to 52,670
GFF5193
GFF5194 - L-arabinose ABC transporter, substrate-binding protein AraF, at 52,683 to 53,753
GFF5194
Position (kb) 51
52
53 Strain fitness (log2 ratio) -2
-1
0
1
2 at 51.073 kb on - strand, within GFF5192 at 51.310 kb on + strand, within GFF5192 at 51.310 kb on + strand, within GFF5192 at 51.310 kb on + strand, within GFF5192 at 51.311 kb on - strand, within GFF5192 at 51.311 kb on - strand, within GFF5192 at 51.407 kb on - strand, within GFF5192 at 51.590 kb on - strand at 51.677 kb on - strand at 51.677 kb on - strand at 51.948 kb on + strand, within GFF5193 at 51.948 kb on + strand, within GFF5193 at 52.090 kb on - strand, within GFF5193 at 52.090 kb on - strand, within GFF5193 at 52.666 kb on - strand at 52.842 kb on + strand, within GFF5194 at 52.861 kb on - strand, within GFF5194 at 52.861 kb on - strand, within GFF5194 at 53.064 kb on + strand, within GFF5194 at 53.064 kb on + strand, within GFF5194 at 53.208 kb on + strand, within GFF5194 at 53.238 kb on + strand, within GFF5194 at 53.358 kb on + strand, within GFF5194 at 53.358 kb on + strand, within GFF5194 at 53.358 kb on + strand, within GFF5194 at 53.359 kb on - strand, within GFF5194 at 53.359 kb on - strand, within GFF5194 at 53.634 kb on + strand, within GFF5194 at 53.634 kb on + strand, within GFF5194 at 53.635 kb on - strand, within GFF5194 at 53.665 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 51,073 - GFF5192 0.60 -0.4 51,310 + GFF5192 0.76 -0.6 51,310 + GFF5192 0.76 -0.2 51,310 + GFF5192 0.76 -0.6 51,311 - GFF5192 0.76 -0.6 51,311 - GFF5192 0.76 -2.0 51,407 - GFF5192 0.82 +0.2 51,590 - -1.3 51,677 - -0.8 51,677 - -1.7 51,948 + GFF5193 0.25 +0.2 51,948 + GFF5193 0.25 +0.6 52,090 - GFF5193 0.40 +1.0 52,090 - GFF5193 0.40 +0.2 52,666 - +2.2 52,842 + GFF5194 0.15 +1.4 52,861 - GFF5194 0.17 +1.2 52,861 - GFF5194 0.17 +2.3 53,064 + GFF5194 0.36 -0.2 53,064 + GFF5194 0.36 -2.4 53,208 + GFF5194 0.49 -0.1 53,238 + GFF5194 0.52 +1.6 53,358 + GFF5194 0.63 -1.0 53,358 + GFF5194 0.63 -2.2 53,358 + GFF5194 0.63 -0.2 53,359 - GFF5194 0.63 -1.4 53,359 - GFF5194 0.63 +0.3 53,634 + GFF5194 0.89 -2.5 53,634 + GFF5194 0.89 +1.3 53,635 - GFF5194 0.89 -2.0 53,665 - +0.2
Or see this region's nucleotide sequence