Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5147 and GFF5148 are separated by 25 nucleotides
GFF5147 - Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17), at 309 to 1,205
GFF5147
GFF5148 - Taurine ABC transporter, substrate-binding protein TauA, at 1,231 to 2,241
GFF5148
Position (kb) 0
1
2 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 0.151 kb on + strand at 0.152 kb on - strand at 0.152 kb on - strand at 0.180 kb on - strand at 0.180 kb on - strand at 0.180 kb on - strand at 0.242 kb on - strand at 0.242 kb on - strand at 0.251 kb on + strand at 0.251 kb on + strand at 0.251 kb on + strand at 0.251 kb on + strand at 0.251 kb on + strand at 0.251 kb on + strand at 0.251 kb on + strand at 0.251 kb on + strand at 0.252 kb on - strand at 0.252 kb on - strand at 0.252 kb on - strand at 0.252 kb on - strand at 0.256 kb on + strand at 0.256 kb on + strand at 0.256 kb on + strand at 0.256 kb on + strand at 0.256 kb on + strand at 0.256 kb on + strand at 0.256 kb on + strand at 0.256 kb on + strand at 0.256 kb on + strand at 0.256 kb on + strand at 0.256 kb on + strand at 0.257 kb on - strand at 0.257 kb on - strand at 0.257 kb on - strand at 0.257 kb on - strand at 0.257 kb on - strand at 0.257 kb on - strand at 0.257 kb on - strand at 0.257 kb on - strand at 0.257 kb on - strand at 0.296 kb on + strand at 0.296 kb on + strand at 0.296 kb on + strand at 0.296 kb on + strand at 0.296 kb on + strand at 0.296 kb on + strand at 0.296 kb on + strand at 0.296 kb on + strand at 0.296 kb on + strand at 0.296 kb on + strand at 0.296 kb on + strand at 0.296 kb on + strand at 0.296 kb on + strand at 0.296 kb on + strand at 0.296 kb on + strand at 0.296 kb on + strand at 0.297 kb on - strand at 0.297 kb on - strand at 0.297 kb on - strand at 0.297 kb on - strand at 0.297 kb on - strand at 0.297 kb on - strand at 0.297 kb on - strand at 0.297 kb on - strand at 0.297 kb on - strand at 0.297 kb on - strand at 0.367 kb on + strand at 0.367 kb on + strand at 0.367 kb on + strand at 0.367 kb on + strand at 0.367 kb on + strand at 0.368 kb on - strand at 0.368 kb on - strand at 0.368 kb on - strand at 0.409 kb on + strand, within GFF5147 at 0.409 kb on + strand, within GFF5147 at 0.409 kb on + strand, within GFF5147 at 0.409 kb on + strand, within GFF5147 at 0.409 kb on + strand, within GFF5147 at 0.410 kb on - strand, within GFF5147 at 0.410 kb on - strand, within GFF5147 at 0.410 kb on - strand, within GFF5147 at 0.410 kb on - strand, within GFF5147 at 0.410 kb on - strand, within GFF5147 at 0.410 kb on - strand, within GFF5147 at 0.484 kb on + strand, within GFF5147 at 0.485 kb on - strand, within GFF5147 at 0.657 kb on + strand, within GFF5147 at 0.657 kb on + strand, within GFF5147 at 0.657 kb on + strand, within GFF5147 at 0.657 kb on + strand, within GFF5147 at 0.657 kb on + strand, within GFF5147 at 0.658 kb on - strand, within GFF5147 at 0.658 kb on - strand, within GFF5147 at 0.658 kb on - strand, within GFF5147 at 0.658 kb on - strand, within GFF5147 at 0.658 kb on - strand, within GFF5147 at 0.658 kb on - strand, within GFF5147 at 0.678 kb on + strand, within GFF5147 at 0.678 kb on + strand, within GFF5147 at 0.678 kb on + strand, within GFF5147 at 0.678 kb on + strand, within GFF5147 at 0.679 kb on - strand, within GFF5147 at 0.679 kb on - strand, within GFF5147 at 0.679 kb on - strand, within GFF5147 at 0.679 kb on - strand, within GFF5147 at 0.679 kb on - strand, within GFF5147 at 0.679 kb on - strand, within GFF5147 at 0.679 kb on - strand, within GFF5147 at 0.831 kb on + strand, within GFF5147 at 0.831 kb on + strand, within GFF5147 at 0.831 kb on + strand, within GFF5147 at 0.831 kb on + strand, within GFF5147 at 0.831 kb on + strand, within GFF5147 at 0.831 kb on + strand, within GFF5147 at 0.831 kb on + strand, within GFF5147 at 0.831 kb on + strand, within GFF5147 at 0.831 kb on + strand, within GFF5147 at 0.831 kb on + strand, within GFF5147 at 0.831 kb on + strand, within GFF5147 at 0.832 kb on - strand, within GFF5147 at 0.832 kb on - strand, within GFF5147 at 0.832 kb on - strand, within GFF5147 at 0.832 kb on - strand, within GFF5147 at 0.832 kb on - strand, within GFF5147 at 0.832 kb on - strand, within GFF5147 at 0.832 kb on - strand, within GFF5147 at 0.832 kb on - strand, within GFF5147 at 0.843 kb on + strand, within GFF5147 at 0.843 kb on + strand, within GFF5147 at 0.843 kb on + strand, within GFF5147 at 0.844 kb on - strand, within GFF5147 at 0.844 kb on - strand, within GFF5147 at 0.844 kb on - strand, within GFF5147 at 1.071 kb on + strand, within GFF5147 at 1.072 kb on - strand, within GFF5147 at 1.348 kb on + strand, within GFF5148 at 1.348 kb on + strand, within GFF5148 at 1.586 kb on - strand, within GFF5148 at 1.586 kb on - strand, within GFF5148 at 1.588 kb on + strand, within GFF5148 at 1.588 kb on + strand, within GFF5148 at 1.589 kb on - strand, within GFF5148 at 1.589 kb on - strand, within GFF5148 at 1.589 kb on - strand, within GFF5148 at 1.589 kb on - strand, within GFF5148 at 1.888 kb on + strand, within GFF5148 at 1.888 kb on + strand, within GFF5148 at 1.888 kb on + strand, within GFF5148 at 1.889 kb on - strand, within GFF5148 at 1.889 kb on - strand, within GFF5148 at 1.928 kb on - strand, within GFF5148 at 1.928 kb on - strand, within GFF5148 at 1.966 kb on + strand, within GFF5148 at 1.966 kb on + strand, within GFF5148 at 1.966 kb on + strand, within GFF5148 at 1.966 kb on + strand, within GFF5148 at 1.966 kb on + strand, within GFF5148 at 1.967 kb on - strand, within GFF5148 at 1.967 kb on - strand, within GFF5148 at 2.041 kb on + strand, within GFF5148 at 2.041 kb on + strand, within GFF5148 at 2.041 kb on + strand, within GFF5148 at 2.041 kb on + strand, within GFF5148 at 2.041 kb on + strand, within GFF5148 at 2.041 kb on + strand, within GFF5148 at 2.041 kb on + strand, within GFF5148 at 2.041 kb on + strand, within GFF5148 at 2.041 kb on + strand, within GFF5148 at 2.041 kb on + strand, within GFF5148 at 2.041 kb on + strand, within GFF5148 at 2.042 kb on - strand, within GFF5148 at 2.042 kb on - strand, within GFF5148 at 2.042 kb on - strand, within GFF5148 at 2.042 kb on - strand, within GFF5148 at 2.042 kb on - strand, within GFF5148 at 2.042 kb on - strand, within GFF5148 at 2.042 kb on - strand, within GFF5148 at 2.042 kb on - strand, within GFF5148 at 2.042 kb on - strand, within GFF5148 at 2.137 kb on + strand, within GFF5148 at 2.137 kb on + strand, within GFF5148 at 2.137 kb on + strand, within GFF5148 at 2.137 kb on + strand, within GFF5148 at 2.137 kb on + strand, within GFF5148 at 2.137 kb on + strand, within GFF5148 at 2.137 kb on + strand, within GFF5148 at 2.138 kb on - strand, within GFF5148 at 2.138 kb on - strand, within GFF5148 at 2.138 kb on - strand, within GFF5148 at 2.203 kb on + strand at 2.203 kb on + strand at 2.203 kb on + strand at 2.204 kb on - strand at 2.204 kb on - strand at 2.204 kb on - strand at 2.204 kb on - strand at 2.204 kb on - strand at 2.204 kb on - strand at 2.204 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 151 + +1.5 152 - -2.0 152 - -2.6 180 - -1.2 180 - -0.4 180 - +1.8 242 - +1.0 242 - -1.0 251 + -2.0 251 + +0.6 251 + +0.2 251 + +1.8 251 + -0.7 251 + +0.8 251 + -2.9 251 + +0.7 252 - +2.6 252 - -0.8 252 - -1.0 252 - +0.9 256 + -0.4 256 + -0.4 256 + -0.5 256 + +1.2 256 + -0.2 256 + +0.9 256 + -1.1 256 + +0.2 256 + -1.1 256 + -2.6 256 + -1.8 257 - -1.9 257 - +2.1 257 - +0.7 257 - -2.2 257 - -1.8 257 - -0.2 257 - -0.0 257 - -1.7 257 - +1.5 296 + -0.1 296 + -2.2 296 + -0.6 296 + -2.3 296 + -0.0 296 + +0.6 296 + -0.7 296 + -2.2 296 + +0.6 296 + -0.1 296 + -0.1 296 + -1.2 296 + +0.2 296 + -1.3 296 + -0.8 296 + -2.0 297 - -0.6 297 - -1.5 297 - +0.2 297 - -2.0 297 - -1.0 297 - -0.4 297 - -0.8 297 - +1.6 297 - -0.6 297 - +0.0 367 + +0.4 367 + -1.2 367 + -1.0 367 + +0.7 367 + -0.5 368 - +0.2 368 - +2.7 368 - -1.9 409 + GFF5147 0.11 +0.6 409 + GFF5147 0.11 +0.9 409 + GFF5147 0.11 -0.1 409 + GFF5147 0.11 -1.1 409 + GFF5147 0.11 -3.2 410 - GFF5147 0.11 +0.2 410 - GFF5147 0.11 +0.6 410 - GFF5147 0.11 +2.0 410 - GFF5147 0.11 -2.4 410 - GFF5147 0.11 -0.4 410 - GFF5147 0.11 -0.4 484 + GFF5147 0.20 +1.2 485 - GFF5147 0.20 -1.1 657 + GFF5147 0.39 -0.1 657 + GFF5147 0.39 -2.1 657 + GFF5147 0.39 +1.3 657 + GFF5147 0.39 +1.4 657 + GFF5147 0.39 -1.4 658 - GFF5147 0.39 +0.5 658 - GFF5147 0.39 +1.5 658 - GFF5147 0.39 +2.2 658 - GFF5147 0.39 +0.6 658 - GFF5147 0.39 -1.9 658 - GFF5147 0.39 -0.0 678 + GFF5147 0.41 -0.6 678 + GFF5147 0.41 -0.9 678 + GFF5147 0.41 -0.4 678 + GFF5147 0.41 +1.2 679 - GFF5147 0.41 -1.3 679 - GFF5147 0.41 -0.4 679 - GFF5147 0.41 +1.2 679 - GFF5147 0.41 -2.2 679 - GFF5147 0.41 +2.2 679 - GFF5147 0.41 -2.2 679 - GFF5147 0.41 -0.4 831 + GFF5147 0.58 +0.2 831 + GFF5147 0.58 -1.0 831 + GFF5147 0.58 -1.9 831 + GFF5147 0.58 -1.5 831 + GFF5147 0.58 +1.4 831 + GFF5147 0.58 +0.8 831 + GFF5147 0.58 +1.5 831 + GFF5147 0.58 +2.1 831 + GFF5147 0.58 +1.0 831 + GFF5147 0.58 +1.0 831 + GFF5147 0.58 -1.4 832 - GFF5147 0.58 -0.5 832 - GFF5147 0.58 +1.1 832 - GFF5147 0.58 +2.6 832 - GFF5147 0.58 -2.5 832 - GFF5147 0.58 +0.6 832 - GFF5147 0.58 +2.4 832 - GFF5147 0.58 -0.6 832 - GFF5147 0.58 +1.2 843 + GFF5147 0.60 -1.2 843 + GFF5147 0.60 -3.0 843 + GFF5147 0.60 -1.3 844 - GFF5147 0.60 -0.8 844 - GFF5147 0.60 +0.5 844 - GFF5147 0.60 +0.8 1,071 + GFF5147 0.85 -3.7 1,072 - GFF5147 0.85 +2.1 1,348 + GFF5148 0.12 -2.7 1,348 + GFF5148 0.12 +0.2 1,586 - GFF5148 0.35 -1.2 1,586 - GFF5148 0.35 -0.4 1,588 + GFF5148 0.35 +1.3 1,588 + GFF5148 0.35 +0.1 1,589 - GFF5148 0.35 +0.2 1,589 - GFF5148 0.35 -0.6 1,589 - GFF5148 0.35 -1.0 1,589 - GFF5148 0.35 +1.0 1,888 + GFF5148 0.65 +1.2 1,888 + GFF5148 0.65 -3.3 1,888 + GFF5148 0.65 +0.3 1,889 - GFF5148 0.65 +0.3 1,889 - GFF5148 0.65 -1.0 1,928 - GFF5148 0.69 +1.2 1,928 - GFF5148 0.69 -0.6 1,966 + GFF5148 0.73 -0.1 1,966 + GFF5148 0.73 -0.1 1,966 + GFF5148 0.73 +2.1 1,966 + GFF5148 0.73 -1.1 1,966 + GFF5148 0.73 -1.0 1,967 - GFF5148 0.73 -0.3 1,967 - GFF5148 0.73 -0.2 2,041 + GFF5148 0.80 +1.4 2,041 + GFF5148 0.80 -0.1 2,041 + GFF5148 0.80 -0.0 2,041 + GFF5148 0.80 -1.8 2,041 + GFF5148 0.80 -0.6 2,041 + GFF5148 0.80 +0.0 2,041 + GFF5148 0.80 +0.2 2,041 + GFF5148 0.80 -0.0 2,041 + GFF5148 0.80 -1.2 2,041 + GFF5148 0.80 +1.4 2,041 + GFF5148 0.80 -1.5 2,042 - GFF5148 0.80 -1.0 2,042 - GFF5148 0.80 -1.6 2,042 - GFF5148 0.80 +1.9 2,042 - GFF5148 0.80 +0.7 2,042 - GFF5148 0.80 +1.9 2,042 - GFF5148 0.80 +0.2 2,042 - GFF5148 0.80 +0.6 2,042 - GFF5148 0.80 +2.4 2,042 - GFF5148 0.80 -1.5 2,137 + GFF5148 0.90 -0.9 2,137 + GFF5148 0.90 +1.7 2,137 + GFF5148 0.90 +0.3 2,137 + GFF5148 0.90 +1.8 2,137 + GFF5148 0.90 -0.1 2,137 + GFF5148 0.90 -0.6 2,137 + GFF5148 0.90 +0.9 2,138 - GFF5148 0.90 -1.1 2,138 - GFF5148 0.90 -1.6 2,138 - GFF5148 0.90 +0.6 2,203 + +0.9 2,203 + +0.4 2,203 + -2.0 2,204 - -0.2 2,204 - +0.6 2,204 - -1.2 2,204 - -1.9 2,204 - +0.9 2,204 - +0.6 2,204 - -2.3
Or see this region's nucleotide sequence