Strain Fitness in Variovorax sp. SCN45 around GFF5101

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5099 and GFF5100 are separated by 29 nucleotidesGFF5100 and GFF5101 are separated by 37 nucleotidesGFF5101 and GFF5102 are separated by 35 nucleotides GFF5099 - 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (EC 4.1.2.52), at 200,514 to 201,335 GFF5099 GFF5100 - putative membrane protein, at 201,365 to 201,835 GFF5100 GFF5101 - Dihydroxy-acid dehydratase (EC 4.2.1.9), at 201,873 to 203,609 GFF5101 GFF5102 - BUG/TctC family periplasmic protein, at 203,645 to 204,640 GFF5102 Position (kb) 201 202 203 204Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 200.946 kb on + strand, within GFF5099at 200.946 kb on + strand, within GFF5099at 200.946 kb on + strand, within GFF5099at 200.946 kb on + strand, within GFF5099at 200.946 kb on + strand, within GFF5099at 200.946 kb on + strand, within GFF5099at 200.947 kb on - strand, within GFF5099at 200.947 kb on - strand, within GFF5099at 200.947 kb on - strand, within GFF5099at 201.294 kb on + strandat 201.294 kb on + strandat 201.294 kb on + strandat 201.294 kb on + strandat 201.294 kb on + strandat 201.294 kb on + strandat 201.295 kb on - strandat 201.330 kb on + strandat 201.330 kb on + strandat 201.331 kb on - strandat 201.331 kb on - strandat 201.497 kb on + strand, within GFF5100at 201.497 kb on + strand, within GFF5100at 201.542 kb on + strand, within GFF5100at 201.542 kb on + strand, within GFF5100at 201.543 kb on - strand, within GFF5100at 201.543 kb on - strand, within GFF5100at 201.543 kb on - strand, within GFF5100at 201.543 kb on - strand, within GFF5100at 201.543 kb on - strand, within GFF5100at 201.543 kb on - strand, within GFF5100at 201.543 kb on - strand, within GFF5100at 201.543 kb on - strand, within GFF5100at 201.543 kb on - strand, within GFF5100at 201.557 kb on + strand, within GFF5100at 201.680 kb on + strand, within GFF5100at 201.680 kb on + strand, within GFF5100at 202.089 kb on + strand, within GFF5101at 202.089 kb on + strand, within GFF5101at 202.089 kb on + strand, within GFF5101at 202.090 kb on - strand, within GFF5101at 202.090 kb on - strand, within GFF5101at 202.123 kb on + strand, within GFF5101at 202.123 kb on + strand, within GFF5101at 202.124 kb on - strand, within GFF5101at 202.395 kb on + strand, within GFF5101at 202.395 kb on + strand, within GFF5101at 202.395 kb on + strand, within GFF5101at 202.395 kb on + strand, within GFF5101at 202.395 kb on + strand, within GFF5101at 202.396 kb on - strand, within GFF5101at 202.396 kb on - strand, within GFF5101at 202.842 kb on + strand, within GFF5101at 202.843 kb on - strand, within GFF5101at 202.863 kb on + strand, within GFF5101at 202.863 kb on + strand, within GFF5101at 202.863 kb on + strand, within GFF5101at 202.863 kb on + strand, within GFF5101at 202.863 kb on + strand, within GFF5101at 202.863 kb on + strand, within GFF5101at 202.864 kb on + strand, within GFF5101at 202.864 kb on - strand, within GFF5101at 202.864 kb on - strand, within GFF5101at 202.864 kb on - strand, within GFF5101at 202.864 kb on - strand, within GFF5101at 203.172 kb on + strand, within GFF5101at 203.172 kb on + strand, within GFF5101at 203.173 kb on - strand, within GFF5101at 203.262 kb on + strand, within GFF5101at 203.263 kb on - strand, within GFF5101at 203.263 kb on - strand, within GFF5101at 203.482 kb on + strandat 203.483 kb on - strandat 203.483 kb on - strandat 203.483 kb on - strandat 203.483 kb on - strandat 203.492 kb on - strandat 203.529 kb on + strandat 203.891 kb on + strand, within GFF5102at 203.891 kb on + strand, within GFF5102at 203.958 kb on - strand, within GFF5102at 203.958 kb on - strand, within GFF5102at 203.969 kb on + strand, within GFF5102at 203.969 kb on + strand, within GFF5102at 203.969 kb on + strand, within GFF5102at 203.969 kb on + strand, within GFF5102at 203.969 kb on + strand, within GFF5102at 203.969 kb on + strand, within GFF5102at 203.969 kb on + strand, within GFF5102at 203.969 kb on + strand, within GFF5102at 203.969 kb on + strand, within GFF5102at 203.969 kb on + strand, within GFF5102at 203.969 kb on + strand, within GFF5102at 203.970 kb on - strand, within GFF5102at 203.970 kb on - strand, within GFF5102at 203.970 kb on - strand, within GFF5102at 203.970 kb on - strand, within GFF5102at 203.970 kb on - strand, within GFF5102at 203.984 kb on + strand, within GFF5102at 203.984 kb on + strand, within GFF5102at 203.984 kb on + strand, within GFF5102at 203.985 kb on - strand, within GFF5102at 203.985 kb on - strand, within GFF5102at 203.985 kb on - strand, within GFF5102at 204.128 kb on + strand, within GFF5102at 204.128 kb on + strand, within GFF5102at 204.128 kb on + strand, within GFF5102at 204.128 kb on + strand, within GFF5102at 204.216 kb on - strand, within GFF5102at 204.399 kb on - strand, within GFF5102

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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200,946 + GFF5099 0.53 -1.0
200,946 + GFF5099 0.53 -1.0
200,946 + GFF5099 0.53 -0.9
200,946 + GFF5099 0.53 -0.8
200,946 + GFF5099 0.53 -0.8
200,946 + GFF5099 0.53 -1.3
200,947 - GFF5099 0.53 -1.0
200,947 - GFF5099 0.53 -2.6
200,947 - GFF5099 0.53 -0.9
201,294 + +0.7
201,294 + +1.2
201,294 + -1.0
201,294 + -0.5
201,294 + -0.3
201,294 + -0.6
201,295 - -1.5
201,330 + -0.4
201,330 + +1.6
201,331 - -1.7
201,331 - -0.2
201,497 + GFF5100 0.28 -0.1
201,497 + GFF5100 0.28 +1.2
201,542 + GFF5100 0.38 -2.6
201,542 + GFF5100 0.38 -1.1
201,543 - GFF5100 0.38 +0.5
201,543 - GFF5100 0.38 -0.7
201,543 - GFF5100 0.38 +2.8
201,543 - GFF5100 0.38 -0.8
201,543 - GFF5100 0.38 +0.6
201,543 - GFF5100 0.38 -0.3
201,543 - GFF5100 0.38 +0.2
201,543 - GFF5100 0.38 +0.2
201,543 - GFF5100 0.38 -2.0
201,557 + GFF5100 0.41 +0.2
201,680 + GFF5100 0.67 -1.1
201,680 + GFF5100 0.67 +1.1
202,089 + GFF5101 0.12 -0.5
202,089 + GFF5101 0.12 +1.0
202,089 + GFF5101 0.12 -1.5
202,090 - GFF5101 0.12 +0.3
202,090 - GFF5101 0.12 -0.3
202,123 + GFF5101 0.14 +0.8
202,123 + GFF5101 0.14 -0.2
202,124 - GFF5101 0.14 -0.1
202,395 + GFF5101 0.30 +0.2
202,395 + GFF5101 0.30 -0.4
202,395 + GFF5101 0.30 +0.9
202,395 + GFF5101 0.30 -0.5
202,395 + GFF5101 0.30 -2.3
202,396 - GFF5101 0.30 -1.3
202,396 - GFF5101 0.30 +0.3
202,842 + GFF5101 0.56 -1.8
202,843 - GFF5101 0.56 -2.5
202,863 + GFF5101 0.57 -0.8
202,863 + GFF5101 0.57 -0.1
202,863 + GFF5101 0.57 +0.8
202,863 + GFF5101 0.57 +0.1
202,863 + GFF5101 0.57 -3.2
202,863 + GFF5101 0.57 +0.1
202,864 + GFF5101 0.57 -2.4
202,864 - GFF5101 0.57 -2.0
202,864 - GFF5101 0.57 -0.3
202,864 - GFF5101 0.57 -0.5
202,864 - GFF5101 0.57 +2.0
203,172 + GFF5101 0.75 -0.7
203,172 + GFF5101 0.75 -2.2
203,173 - GFF5101 0.75 -0.1
203,262 + GFF5101 0.80 +1.0
203,263 - GFF5101 0.80 -2.9
203,263 - GFF5101 0.80 -0.7
203,482 + -0.8
203,483 - -0.0
203,483 - -0.9
203,483 - +0.9
203,483 - -1.3
203,492 - +1.4
203,529 + -1.6
203,891 + GFF5102 0.25 -2.6
203,891 + GFF5102 0.25 -0.7
203,958 - GFF5102 0.31 +0.3
203,958 - GFF5102 0.31 +0.8
203,969 + GFF5102 0.33 +0.0
203,969 + GFF5102 0.33 +0.9
203,969 + GFF5102 0.33 +0.5
203,969 + GFF5102 0.33 -0.8
203,969 + GFF5102 0.33 +0.6
203,969 + GFF5102 0.33 +0.4
203,969 + GFF5102 0.33 -0.5
203,969 + GFF5102 0.33 -2.2
203,969 + GFF5102 0.33 -1.8
203,969 + GFF5102 0.33 +0.9
203,969 + GFF5102 0.33 +1.2
203,970 - GFF5102 0.33 +0.4
203,970 - GFF5102 0.33 -0.2
203,970 - GFF5102 0.33 -1.6
203,970 - GFF5102 0.33 -1.3
203,970 - GFF5102 0.33 +0.4
203,984 + GFF5102 0.34 -2.1
203,984 + GFF5102 0.34 -1.4
203,984 + GFF5102 0.34 +0.7
203,985 - GFF5102 0.34 +0.5
203,985 - GFF5102 0.34 +1.6
203,985 - GFF5102 0.34 +0.4
204,128 + GFF5102 0.48 +0.5
204,128 + GFF5102 0.48 +0.6
204,128 + GFF5102 0.48 +0.2
204,128 + GFF5102 0.48 -2.1
204,216 - GFF5102 0.57 +1.1
204,399 - GFF5102 0.76 +0.9

Or see this region's nucleotide sequence