Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF49 and GFF50 are separated by 102 nucleotides GFF50 and GFF51 are separated by 98 nucleotides GFF51 and GFF52 are separated by 620 nucleotides
GFF49 - no description, at 54,237 to 54,428
GFF49
GFF50 - Murein hydrolase activator NlpD, at 54,531 to 55,268
GFF50
GFF51 - hypothetical protein, at 55,367 to 56,233
GFF51
GFF52 - Polyketide synthase modules and related proteins, at 56,854 to 64,083
GFF52
Position (kb) 55
56
57 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 54.430 kb on + strand at 54.430 kb on + strand at 54.430 kb on + strand at 54.430 kb on + strand at 54.430 kb on + strand at 54.430 kb on + strand at 54.430 kb on + strand at 54.430 kb on + strand at 54.430 kb on + strand at 54.430 kb on + strand at 54.430 kb on + strand at 54.430 kb on + strand at 54.430 kb on + strand at 54.430 kb on + strand at 54.430 kb on + strand at 54.430 kb on + strand at 54.431 kb on - strand at 54.431 kb on - strand at 54.431 kb on - strand at 54.431 kb on - strand at 54.431 kb on - strand at 54.431 kb on - strand at 54.431 kb on - strand at 54.431 kb on - strand at 54.431 kb on - strand at 54.431 kb on - strand at 54.431 kb on - strand at 54.431 kb on - strand at 54.431 kb on - strand at 54.431 kb on - strand at 54.431 kb on - strand at 54.547 kb on + strand at 54.547 kb on + strand at 54.547 kb on + strand at 54.547 kb on + strand at 54.548 kb on - strand at 54.548 kb on - strand at 54.548 kb on - strand at 54.548 kb on - strand at 54.548 kb on - strand at 54.548 kb on - strand at 54.694 kb on + strand, within GFF50 at 54.694 kb on + strand, within GFF50 at 54.694 kb on + strand, within GFF50 at 54.694 kb on + strand, within GFF50 at 54.695 kb on - strand, within GFF50 at 54.704 kb on + strand, within GFF50 at 54.704 kb on + strand, within GFF50 at 54.704 kb on + strand, within GFF50 at 54.704 kb on + strand, within GFF50 at 54.704 kb on + strand, within GFF50 at 54.704 kb on + strand, within GFF50 at 54.704 kb on + strand, within GFF50 at 54.704 kb on + strand, within GFF50 at 54.704 kb on + strand, within GFF50 at 54.705 kb on - strand, within GFF50 at 54.705 kb on - strand, within GFF50 at 54.705 kb on - strand, within GFF50 at 54.705 kb on - strand, within GFF50 at 54.705 kb on - strand, within GFF50 at 54.705 kb on - strand, within GFF50 at 54.705 kb on - strand, within GFF50 at 54.705 kb on - strand, within GFF50 at 54.705 kb on - strand, within GFF50 at 54.705 kb on - strand, within GFF50 at 54.705 kb on - strand, within GFF50 at 54.705 kb on - strand, within GFF50 at 54.705 kb on - strand, within GFF50 at 54.705 kb on - strand, within GFF50 at 54.705 kb on - strand, within GFF50 at 54.705 kb on - strand, within GFF50 at 54.705 kb on - strand, within GFF50 at 54.705 kb on - strand, within GFF50 at 54.705 kb on - strand, within GFF50 at 54.705 kb on - strand, within GFF50 at 54.705 kb on - strand, within GFF50 at 54.705 kb on - strand, within GFF50 at 54.705 kb on - strand, within GFF50 at 54.705 kb on - strand, within GFF50 at 54.705 kb on - strand, within GFF50 at 54.705 kb on - strand, within GFF50 at 54.705 kb on - strand, within GFF50 at 54.706 kb on + strand, within GFF50 at 54.706 kb on + strand, within GFF50 at 54.706 kb on + strand, within GFF50 at 54.706 kb on + strand, within GFF50 at 54.706 kb on + strand, within GFF50 at 54.706 kb on + strand, within GFF50 at 54.706 kb on + strand, within GFF50 at 54.706 kb on + strand, within GFF50 at 54.706 kb on + strand, within GFF50 at 54.706 kb on + strand, within GFF50 at 54.706 kb on + strand, within GFF50 at 54.706 kb on + strand, within GFF50 at 54.706 kb on + strand, within GFF50 at 54.706 kb on + strand, within GFF50 at 54.706 kb on + strand, within GFF50 at 54.706 kb on + strand, within GFF50 at 54.706 kb on + strand, within GFF50 at 54.706 kb on + strand, within GFF50 at 54.706 kb on + strand, within GFF50 at 54.706 kb on + strand, within GFF50 at 54.706 kb on + strand, within GFF50 at 54.706 kb on + strand, within GFF50 at 54.706 kb on + strand, within GFF50 at 54.706 kb on + strand, within GFF50 at 54.706 kb on + strand, within GFF50 at 54.706 kb on + strand, within GFF50 at 54.707 kb on - strand, within GFF50 at 54.707 kb on - strand, within GFF50 at 54.707 kb on - strand, within GFF50 at 54.707 kb on - strand, within GFF50 at 54.707 kb on - strand, within GFF50 at 54.707 kb on - strand, within GFF50 at 54.707 kb on - strand, within GFF50 at 54.707 kb on - strand, within GFF50 at 54.707 kb on - strand, within GFF50 at 54.707 kb on - strand, within GFF50 at 54.707 kb on - strand, within GFF50 at 54.707 kb on - strand, within GFF50 at 54.707 kb on - strand, within GFF50 at 54.707 kb on - strand, within GFF50 at 54.707 kb on - strand, within GFF50 at 54.707 kb on - strand, within GFF50 at 54.707 kb on - strand, within GFF50 at 54.707 kb on - strand, within GFF50 at 54.707 kb on - strand, within GFF50 at 54.707 kb on - strand, within GFF50 at 54.707 kb on - strand, within GFF50 at 54.707 kb on - strand, within GFF50 at 54.707 kb on - strand, within GFF50 at 54.707 kb on - strand, within GFF50 at 54.707 kb on - strand, within GFF50 at 54.707 kb on - strand, within GFF50 at 54.707 kb on - strand, within GFF50 at 54.707 kb on - strand, within GFF50 at 54.707 kb on - strand, within GFF50 at 54.707 kb on - strand, within GFF50 at 54.821 kb on - strand, within GFF50 at 55.135 kb on + strand, within GFF50 at 55.136 kb on - strand, within GFF50 at 55.136 kb on - strand, within GFF50 at 55.162 kb on + strand, within GFF50 at 55.162 kb on + strand, within GFF50 at 55.163 kb on - strand, within GFF50 at 55.163 kb on - strand, within GFF50 at 55.163 kb on - strand, within GFF50 at 55.163 kb on - strand, within GFF50 at 55.163 kb on - strand, within GFF50 at 55.303 kb on + strand at 55.303 kb on + strand at 55.458 kb on + strand, within GFF51 at 55.458 kb on + strand, within GFF51 at 55.458 kb on + strand, within GFF51 at 55.458 kb on + strand, within GFF51 at 55.458 kb on + strand, within GFF51 at 55.459 kb on - strand, within GFF51 at 55.459 kb on - strand, within GFF51 at 55.459 kb on - strand, within GFF51 at 55.459 kb on - strand, within GFF51 at 55.459 kb on - strand, within GFF51 at 55.459 kb on - strand, within GFF51 at 55.524 kb on + strand, within GFF51 at 55.525 kb on - strand, within GFF51 at 55.671 kb on + strand, within GFF51 at 55.671 kb on + strand, within GFF51 at 55.671 kb on + strand, within GFF51 at 55.671 kb on + strand, within GFF51 at 55.671 kb on + strand, within GFF51 at 55.672 kb on - strand, within GFF51 at 55.716 kb on + strand, within GFF51 at 55.716 kb on + strand, within GFF51 at 55.716 kb on + strand, within GFF51 at 55.717 kb on - strand, within GFF51 at 55.717 kb on - strand, within GFF51 at 55.717 kb on - strand, within GFF51 at 55.717 kb on - strand, within GFF51 at 55.717 kb on - strand, within GFF51 at 55.796 kb on + strand, within GFF51 at 55.796 kb on + strand, within GFF51 at 55.796 kb on + strand, within GFF51 at 55.796 kb on + strand, within GFF51 at 55.797 kb on - strand, within GFF51 at 55.797 kb on - strand, within GFF51 at 55.797 kb on - strand, within GFF51 at 55.900 kb on + strand, within GFF51 at 55.900 kb on + strand, within GFF51 at 55.900 kb on + strand, within GFF51 at 55.900 kb on + strand, within GFF51 at 55.901 kb on - strand, within GFF51 at 55.901 kb on - strand, within GFF51 at 55.902 kb on + strand, within GFF51 at 55.902 kb on + strand, within GFF51 at 55.902 kb on + strand, within GFF51 at 55.902 kb on + strand, within GFF51 at 55.902 kb on + strand, within GFF51 at 55.903 kb on - strand, within GFF51 at 55.903 kb on - strand, within GFF51 at 55.903 kb on - strand, within GFF51 at 55.903 kb on - strand, within GFF51 at 55.903 kb on - strand, within GFF51 at 55.990 kb on + strand, within GFF51 at 55.991 kb on - strand, within GFF51 at 55.991 kb on - strand, within GFF51 at 55.991 kb on - strand, within GFF51 at 55.991 kb on - strand, within GFF51 at 55.991 kb on - strand, within GFF51 at 55.991 kb on - strand, within GFF51 at 56.071 kb on - strand, within GFF51 at 56.071 kb on - strand, within GFF51 at 56.071 kb on - strand, within GFF51 at 56.071 kb on - strand, within GFF51 at 56.097 kb on + strand, within GFF51 at 56.098 kb on - strand, within GFF51 at 56.098 kb on - strand, within GFF51 at 56.179 kb on - strand at 56.204 kb on + strand at 56.204 kb on + strand at 56.205 kb on - strand at 56.213 kb on + strand at 56.216 kb on + strand at 56.216 kb on + strand at 56.217 kb on - strand at 56.272 kb on + strand at 56.273 kb on - strand at 56.273 kb on - strand at 56.306 kb on + strand at 56.307 kb on - strand at 56.344 kb on - strand at 56.347 kb on - strand at 56.347 kb on - strand at 56.347 kb on - strand at 56.503 kb on + strand at 56.503 kb on + strand at 56.503 kb on + strand at 56.504 kb on - strand at 56.504 kb on - strand at 56.524 kb on + strand at 56.524 kb on + strand at 56.524 kb on + strand at 56.524 kb on + strand at 56.524 kb on + strand at 56.524 kb on + strand at 56.525 kb on - strand at 56.525 kb on - strand at 56.525 kb on - strand at 56.525 kb on - strand at 56.525 kb on - strand at 56.525 kb on - strand at 56.550 kb on - strand at 56.566 kb on - strand at 56.604 kb on + strand at 56.605 kb on - strand at 56.605 kb on - strand at 56.607 kb on + strand at 56.620 kb on + strand at 56.620 kb on + strand at 56.620 kb on + strand at 56.620 kb on + strand at 56.624 kb on + strand at 56.625 kb on - strand at 56.625 kb on - strand at 56.625 kb on - strand at 56.625 kb on - strand at 56.625 kb on - strand at 56.636 kb on + strand at 56.641 kb on + strand at 56.679 kb on + strand at 56.679 kb on + strand at 56.680 kb on - strand at 56.785 kb on + strand at 56.785 kb on + strand at 56.785 kb on + strand at 56.785 kb on + strand at 56.785 kb on + strand at 56.785 kb on + strand at 56.786 kb on - strand at 56.786 kb on - strand at 56.786 kb on - strand at 56.786 kb on - strand at 56.786 kb on - strand at 56.786 kb on - strand at 56.786 kb on - strand at 57.032 kb on + strand at 57.032 kb on + strand at 57.032 kb on + strand at 57.033 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 54,430 + -1.5 54,430 + +2.0 54,430 + -0.6 54,430 + -1.0 54,430 + -1.5 54,430 + -0.3 54,430 + -1.2 54,430 + -0.4 54,430 + +0.9 54,430 + -2.0 54,430 + +1.8 54,430 + -0.2 54,430 + -0.5 54,430 + +0.3 54,430 + -0.2 54,430 + -0.1 54,431 - -0.6 54,431 - -0.5 54,431 - -1.2 54,431 - +0.2 54,431 - +1.8 54,431 - -2.5 54,431 - +1.0 54,431 - -3.3 54,431 - -0.9 54,431 - +0.7 54,431 - -0.8 54,431 - +1.8 54,431 - +1.8 54,431 - +0.6 54,431 - +2.3 54,547 + +1.6 54,547 + +0.1 54,547 + +1.6 54,547 + +1.1 54,548 - +0.8 54,548 - -1.5 54,548 - -0.2 54,548 - -0.8 54,548 - +0.3 54,548 - -1.3 54,694 + GFF50 0.22 -0.2 54,694 + GFF50 0.22 +0.2 54,694 + GFF50 0.22 -2.1 54,694 + GFF50 0.22 -0.2 54,695 - GFF50 0.22 +2.1 54,704 + GFF50 0.23 -2.1 54,704 + GFF50 0.23 -1.7 54,704 + GFF50 0.23 -1.7 54,704 + GFF50 0.23 -1.8 54,704 + GFF50 0.23 -2.5 54,704 + GFF50 0.23 +0.6 54,704 + GFF50 0.23 -1.3 54,704 + GFF50 0.23 +0.3 54,704 + GFF50 0.23 -0.3 54,705 - GFF50 0.24 +0.5 54,705 - GFF50 0.24 -0.1 54,705 - GFF50 0.24 -1.2 54,705 - GFF50 0.24 +0.3 54,705 - GFF50 0.24 +1.8 54,705 - GFF50 0.24 +0.3 54,705 - GFF50 0.24 +0.4 54,705 - GFF50 0.24 -0.6 54,705 - GFF50 0.24 +0.5 54,705 - GFF50 0.24 -0.2 54,705 - GFF50 0.24 -3.0 54,705 - GFF50 0.24 -2.5 54,705 - GFF50 0.24 +0.2 54,705 - GFF50 0.24 +0.3 54,705 - GFF50 0.24 -2.4 54,705 - GFF50 0.24 +0.2 54,705 - GFF50 0.24 +0.2 54,705 - GFF50 0.24 +0.2 54,705 - GFF50 0.24 +0.2 54,705 - GFF50 0.24 -1.2 54,705 - GFF50 0.24 +0.8 54,705 - GFF50 0.24 +0.4 54,705 - GFF50 0.24 +4.4 54,705 - GFF50 0.24 -0.8 54,705 - GFF50 0.24 -0.2 54,705 - GFF50 0.24 -0.8 54,705 - GFF50 0.24 -1.6 54,706 + GFF50 0.24 -0.5 54,706 + GFF50 0.24 +0.0 54,706 + GFF50 0.24 -2.0 54,706 + GFF50 0.24 -1.0 54,706 + GFF50 0.24 +0.8 54,706 + GFF50 0.24 -0.8 54,706 + GFF50 0.24 +0.2 54,706 + GFF50 0.24 -0.5 54,706 + GFF50 0.24 -1.0 54,706 + GFF50 0.24 -0.7 54,706 + GFF50 0.24 -3.9 54,706 + GFF50 0.24 -0.5 54,706 + GFF50 0.24 -1.4 54,706 + GFF50 0.24 -2.7 54,706 + GFF50 0.24 -1.8 54,706 + GFF50 0.24 -1.0 54,706 + GFF50 0.24 -1.5 54,706 + GFF50 0.24 -1.3 54,706 + GFF50 0.24 +1.2 54,706 + GFF50 0.24 +0.5 54,706 + GFF50 0.24 +0.2 54,706 + GFF50 0.24 -0.5 54,706 + GFF50 0.24 -2.5 54,706 + GFF50 0.24 +0.8 54,706 + GFF50 0.24 -0.2 54,706 + GFF50 0.24 -1.7 54,707 - GFF50 0.24 +0.5 54,707 - GFF50 0.24 +1.2 54,707 - GFF50 0.24 +0.3 54,707 - GFF50 0.24 +0.2 54,707 - GFF50 0.24 -1.0 54,707 - GFF50 0.24 +0.6 54,707 - GFF50 0.24 -1.4 54,707 - GFF50 0.24 -1.7 54,707 - GFF50 0.24 -2.1 54,707 - GFF50 0.24 -0.4 54,707 - GFF50 0.24 +0.1 54,707 - GFF50 0.24 -2.5 54,707 - GFF50 0.24 +0.7 54,707 - GFF50 0.24 -1.2 54,707 - GFF50 0.24 -1.0 54,707 - GFF50 0.24 +0.9 54,707 - GFF50 0.24 -1.7 54,707 - GFF50 0.24 +0.0 54,707 - GFF50 0.24 +1.1 54,707 - GFF50 0.24 -0.2 54,707 - GFF50 0.24 -0.1 54,707 - GFF50 0.24 -0.8 54,707 - GFF50 0.24 +0.2 54,707 - GFF50 0.24 -0.2 54,707 - GFF50 0.24 +0.1 54,707 - GFF50 0.24 -1.5 54,707 - GFF50 0.24 -0.6 54,707 - GFF50 0.24 -0.4 54,707 - GFF50 0.24 -0.0 54,707 - GFF50 0.24 -2.1 54,821 - GFF50 0.39 +0.4 55,135 + GFF50 0.82 +0.4 55,136 - GFF50 0.82 -0.4 55,136 - GFF50 0.82 -1.4 55,162 + GFF50 0.86 +0.8 55,162 + GFF50 0.86 -0.8 55,163 - GFF50 0.86 -2.4 55,163 - GFF50 0.86 -1.2 55,163 - GFF50 0.86 +0.1 55,163 - GFF50 0.86 +1.6 55,163 - GFF50 0.86 -1.3 55,303 + -0.2 55,303 + +1.8 55,458 + GFF51 0.10 -2.5 55,458 + GFF51 0.10 +1.0 55,458 + GFF51 0.10 -1.6 55,458 + GFF51 0.10 -1.0 55,458 + GFF51 0.10 -0.4 55,459 - GFF51 0.11 -0.2 55,459 - GFF51 0.11 +1.3 55,459 - GFF51 0.11 -0.4 55,459 - GFF51 0.11 +1.8 55,459 - GFF51 0.11 -0.5 55,459 - GFF51 0.11 +2.2 55,524 + GFF51 0.18 -1.3 55,525 - GFF51 0.18 -1.1 55,671 + GFF51 0.35 -2.9 55,671 + GFF51 0.35 -1.2 55,671 + GFF51 0.35 +2.1 55,671 + GFF51 0.35 -0.8 55,671 + GFF51 0.35 -2.6 55,672 - GFF51 0.35 +0.9 55,716 + GFF51 0.40 +0.2 55,716 + GFF51 0.40 +0.2 55,716 + GFF51 0.40 +2.0 55,717 - GFF51 0.40 +0.1 55,717 - GFF51 0.40 +1.3 55,717 - GFF51 0.40 +1.1 55,717 - GFF51 0.40 -0.8 55,717 - GFF51 0.40 -1.0 55,796 + GFF51 0.49 -2.3 55,796 + GFF51 0.49 +0.8 55,796 + GFF51 0.49 -1.0 55,796 + GFF51 0.49 +0.8 55,797 - GFF51 0.50 -0.7 55,797 - GFF51 0.50 +0.8 55,797 - GFF51 0.50 +1.8 55,900 + GFF51 0.61 -0.2 55,900 + GFF51 0.61 +0.9 55,900 + GFF51 0.61 -2.6 55,900 + GFF51 0.61 +0.8 55,901 - GFF51 0.62 +0.2 55,901 - GFF51 0.62 -1.2 55,902 + GFF51 0.62 -0.5 55,902 + GFF51 0.62 -1.0 55,902 + GFF51 0.62 -0.3 55,902 + GFF51 0.62 -1.0 55,902 + GFF51 0.62 +0.0 55,903 - GFF51 0.62 -1.3 55,903 - GFF51 0.62 -0.8 55,903 - GFF51 0.62 +0.1 55,903 - GFF51 0.62 -4.0 55,903 - GFF51 0.62 +1.3 55,990 + GFF51 0.72 -0.3 55,991 - GFF51 0.72 -0.8 55,991 - GFF51 0.72 -1.7 55,991 - GFF51 0.72 -3.3 55,991 - GFF51 0.72 -0.1 55,991 - GFF51 0.72 +1.4 55,991 - GFF51 0.72 -1.5 56,071 - GFF51 0.81 -2.1 56,071 - GFF51 0.81 +1.5 56,071 - GFF51 0.81 +0.3 56,071 - GFF51 0.81 +1.2 56,097 + GFF51 0.84 -0.8 56,098 - GFF51 0.84 -0.5 56,098 - GFF51 0.84 -0.3 56,179 - +0.8 56,204 + -2.3 56,204 + -0.5 56,205 - +0.7 56,213 + +2.4 56,216 + -3.7 56,216 + +0.2 56,217 - -0.6 56,272 + -0.5 56,273 - -2.8 56,273 - +0.0 56,306 + -0.2 56,307 - -0.5 56,344 - +1.0 56,347 - -2.0 56,347 - -1.3 56,347 - -0.6 56,503 + -0.2 56,503 + -0.7 56,503 + +0.2 56,504 - +1.7 56,504 - -0.5 56,524 + -0.7 56,524 + +0.7 56,524 + +0.5 56,524 + -1.0 56,524 + +1.6 56,524 + -0.3 56,525 - -2.1 56,525 - -0.8 56,525 - -0.9 56,525 - -1.0 56,525 - +1.6 56,525 - -2.4 56,550 - +3.4 56,566 - -3.0 56,604 + +0.2 56,605 - -1.2 56,605 - -1.0 56,607 + +0.9 56,620 + -1.3 56,620 + -0.4 56,620 + -1.0 56,620 + +1.4 56,624 + -0.1 56,625 - -1.4 56,625 - -0.1 56,625 - +0.2 56,625 - -0.3 56,625 - -2.1 56,636 + -3.7 56,641 + -2.0 56,679 + +1.2 56,679 + +0.2 56,680 - +1.3 56,785 + -2.2 56,785 + -1.2 56,785 + -0.0 56,785 + +0.7 56,785 + -1.1 56,785 + -0.8 56,786 - -0.1 56,786 - -0.1 56,786 - -1.4 56,786 - +0.6 56,786 - +0.3 56,786 - +0.2 56,786 - -0.4 57,032 + +2.1 57,032 + +0.5 57,032 + -1.0 57,033 - +0.3
Or see this region's nucleotide sequence