Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF506 and GFF507 are separated by 62 nucleotides GFF507 and GFF508 overlap by 4 nucleotides GFF508 and GFF509 are separated by 16 nucleotides GFF509 and GFF510 overlap by 4 nucleotides
GFF506 - hypothetical protein, at 548,123 to 548,629
GFF506
GFF507 - Hydrolase, alpha/beta fold family, at 548,692 to 549,585
GFF507
GFF508 - ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 549,582 to 550,649
GFF508
GFF509 - ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 550,666 to 551,646
GFF509
GFF510 - ABC transporter, ATP-binding protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 551,643 to 552,371
GFF510
Position (kb) 549
550
551 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 548.613 kb on + strand at 548.613 kb on + strand at 548.613 kb on + strand at 548.613 kb on + strand at 548.613 kb on + strand at 548.613 kb on + strand at 548.614 kb on - strand at 548.921 kb on + strand, within GFF507 at 548.921 kb on + strand, within GFF507 at 548.921 kb on + strand, within GFF507 at 548.921 kb on + strand, within GFF507 at 548.921 kb on + strand, within GFF507 at 548.922 kb on - strand, within GFF507 at 548.967 kb on - strand, within GFF507 at 549.059 kb on + strand, within GFF507 at 549.122 kb on + strand, within GFF507 at 549.261 kb on + strand, within GFF507 at 549.261 kb on + strand, within GFF507 at 549.261 kb on + strand, within GFF507 at 549.261 kb on + strand, within GFF507 at 549.261 kb on + strand, within GFF507 at 549.323 kb on + strand, within GFF507 at 549.324 kb on - strand, within GFF507 at 549.338 kb on + strand, within GFF507 at 549.338 kb on + strand, within GFF507 at 549.338 kb on + strand, within GFF507 at 549.338 kb on + strand, within GFF507 at 549.338 kb on + strand, within GFF507 at 549.338 kb on + strand, within GFF507 at 549.338 kb on + strand, within GFF507 at 549.338 kb on + strand, within GFF507 at 549.339 kb on - strand, within GFF507 at 549.339 kb on - strand, within GFF507 at 549.339 kb on - strand, within GFF507 at 549.339 kb on - strand, within GFF507 at 549.339 kb on - strand, within GFF507 at 549.339 kb on - strand, within GFF507 at 549.545 kb on + strand at 549.546 kb on - strand at 549.631 kb on + strand at 549.631 kb on + strand at 549.631 kb on + strand at 549.631 kb on + strand at 549.632 kb on - strand at 549.632 kb on - strand at 549.632 kb on - strand at 549.632 kb on - strand at 549.632 kb on - strand at 549.634 kb on + strand at 549.754 kb on + strand, within GFF508 at 549.754 kb on + strand, within GFF508 at 549.755 kb on - strand, within GFF508 at 549.799 kb on + strand, within GFF508 at 549.799 kb on + strand, within GFF508 at 549.800 kb on - strand, within GFF508 at 549.883 kb on + strand, within GFF508 at 549.884 kb on - strand, within GFF508 at 549.958 kb on + strand, within GFF508 at 549.958 kb on + strand, within GFF508 at 549.959 kb on - strand, within GFF508 at 549.959 kb on - strand, within GFF508 at 550.093 kb on + strand, within GFF508 at 550.093 kb on + strand, within GFF508 at 550.093 kb on + strand, within GFF508 at 550.093 kb on + strand, within GFF508 at 550.093 kb on + strand, within GFF508 at 550.093 kb on + strand, within GFF508 at 550.094 kb on - strand, within GFF508 at 550.094 kb on - strand, within GFF508 at 550.094 kb on - strand, within GFF508 at 550.096 kb on + strand, within GFF508 at 550.096 kb on + strand, within GFF508 at 550.096 kb on + strand, within GFF508 at 550.096 kb on + strand, within GFF508 at 550.096 kb on + strand, within GFF508 at 550.097 kb on - strand, within GFF508 at 550.097 kb on - strand, within GFF508 at 550.411 kb on + strand, within GFF508 at 550.412 kb on - strand, within GFF508 at 550.463 kb on - strand, within GFF508 at 550.685 kb on + strand at 550.686 kb on - strand at 550.772 kb on + strand, within GFF509 at 550.772 kb on + strand, within GFF509 at 550.772 kb on + strand, within GFF509 at 550.772 kb on + strand, within GFF509 at 550.772 kb on + strand, within GFF509 at 550.772 kb on + strand, within GFF509 at 550.773 kb on - strand, within GFF509 at 550.773 kb on - strand, within GFF509 at 550.773 kb on - strand, within GFF509 at 550.773 kb on - strand, within GFF509 at 550.773 kb on - strand, within GFF509 at 550.773 kb on - strand, within GFF509 at 550.773 kb on - strand, within GFF509 at 550.773 kb on - strand, within GFF509 at 551.647 kb on - strand at 551.647 kb on - strand at 551.647 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 548,613 + +0.8 548,613 + -1.1 548,613 + +1.0 548,613 + +0.7 548,613 + -0.1 548,613 + -1.9 548,614 - +0.2 548,921 + GFF507 0.26 +1.2 548,921 + GFF507 0.26 +1.0 548,921 + GFF507 0.26 -1.3 548,921 + GFF507 0.26 -0.1 548,921 + GFF507 0.26 -0.8 548,922 - GFF507 0.26 +1.1 548,967 - GFF507 0.31 +1.8 549,059 + GFF507 0.41 -0.3 549,122 + GFF507 0.48 -1.5 549,261 + GFF507 0.64 -0.2 549,261 + GFF507 0.64 -1.4 549,261 + GFF507 0.64 -0.9 549,261 + GFF507 0.64 +0.0 549,261 + GFF507 0.64 -0.2 549,323 + GFF507 0.71 +0.6 549,324 - GFF507 0.71 +1.4 549,338 + GFF507 0.72 -2.6 549,338 + GFF507 0.72 +0.8 549,338 + GFF507 0.72 -0.2 549,338 + GFF507 0.72 -3.5 549,338 + GFF507 0.72 -1.0 549,338 + GFF507 0.72 -0.5 549,338 + GFF507 0.72 +1.5 549,338 + GFF507 0.72 +0.5 549,339 - GFF507 0.72 -3.5 549,339 - GFF507 0.72 -3.1 549,339 - GFF507 0.72 +1.7 549,339 - GFF507 0.72 -0.2 549,339 - GFF507 0.72 -1.1 549,339 - GFF507 0.72 -1.0 549,545 + +0.1 549,546 - -1.6 549,631 + +0.8 549,631 + -0.8 549,631 + -2.1 549,631 + -0.2 549,632 - +0.4 549,632 - -0.5 549,632 - -2.1 549,632 - -1.2 549,632 - -4.4 549,634 + -1.2 549,754 + GFF508 0.16 -0.8 549,754 + GFF508 0.16 -0.2 549,755 - GFF508 0.16 +0.0 549,799 + GFF508 0.20 -0.6 549,799 + GFF508 0.20 -0.2 549,800 - GFF508 0.20 -1.9 549,883 + GFF508 0.28 -1.3 549,884 - GFF508 0.28 +1.2 549,958 + GFF508 0.35 +1.2 549,958 + GFF508 0.35 +0.3 549,959 - GFF508 0.35 +0.3 549,959 - GFF508 0.35 +0.9 550,093 + GFF508 0.48 -1.2 550,093 + GFF508 0.48 -2.0 550,093 + GFF508 0.48 +0.6 550,093 + GFF508 0.48 +1.1 550,093 + GFF508 0.48 +0.3 550,093 + GFF508 0.48 -0.5 550,094 - GFF508 0.48 +1.8 550,094 - GFF508 0.48 +0.0 550,094 - GFF508 0.48 -1.0 550,096 + GFF508 0.48 -0.4 550,096 + GFF508 0.48 +1.1 550,096 + GFF508 0.48 -1.4 550,096 + GFF508 0.48 -0.3 550,096 + GFF508 0.48 +0.1 550,097 - GFF508 0.48 -1.8 550,097 - GFF508 0.48 -2.2 550,411 + GFF508 0.78 +0.7 550,412 - GFF508 0.78 -0.6 550,463 - GFF508 0.82 +0.7 550,685 + -0.2 550,686 - -2.0 550,772 + GFF509 0.11 +1.8 550,772 + GFF509 0.11 -1.4 550,772 + GFF509 0.11 +1.2 550,772 + GFF509 0.11 -1.0 550,772 + GFF509 0.11 +0.2 550,772 + GFF509 0.11 -0.7 550,773 - GFF509 0.11 -1.4 550,773 - GFF509 0.11 -1.2 550,773 - GFF509 0.11 -2.2 550,773 - GFF509 0.11 -2.1 550,773 - GFF509 0.11 -0.3 550,773 - GFF509 0.11 +0.0 550,773 - GFF509 0.11 -1.4 550,773 - GFF509 0.11 -1.8 551,647 - -0.4 551,647 - +1.2 551,647 - +1.3
Or see this region's nucleotide sequence