Strain Fitness in Variovorax sp. SCN45 around GFF5064

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5063 and GFF5064 are separated by 39 nucleotidesGFF5064 and GFF5065 are separated by 12 nucleotidesGFF5065 and GFF5066 are separated by 12 nucleotides GFF5063 - Aspartyl-tRNA(Asn) amidotransferase subunit B (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit B (EC 6.3.5.7), at 165,173 to 166,663 GFF5063 GFF5064 - Exonuclease SbcC, at 166,703 to 167,392 GFF5064 GFF5065 - Orotate phosphoribosyltransferase (EC 2.4.2.10), at 167,405 to 168,088 GFF5065 GFF5066 - Exodeoxyribonuclease III (EC 3.1.11.2), at 168,101 to 168,904 GFF5066 Position (kb) 166 167 168Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 166.896 kb on + strand, within GFF5064at 166.896 kb on + strand, within GFF5064at 166.896 kb on + strand, within GFF5064at 166.896 kb on + strand, within GFF5064at 166.896 kb on + strand, within GFF5064at 166.896 kb on + strand, within GFF5064at 166.896 kb on + strand, within GFF5064at 166.896 kb on + strand, within GFF5064at 166.896 kb on + strand, within GFF5064at 166.896 kb on + strand, within GFF5064at 166.896 kb on + strand, within GFF5064at 166.896 kb on + strand, within GFF5064at 166.897 kb on - strand, within GFF5064at 166.897 kb on - strand, within GFF5064at 166.897 kb on - strand, within GFF5064at 166.897 kb on - strand, within GFF5064at 166.897 kb on - strand, within GFF5064at 166.897 kb on - strand, within GFF5064at 166.897 kb on - strand, within GFF5064at 166.897 kb on - strand, within GFF5064at 166.897 kb on - strand, within GFF5064at 166.897 kb on - strand, within GFF5064at 166.897 kb on - strand, within GFF5064at 167.139 kb on + strand, within GFF5064at 167.139 kb on + strand, within GFF5064at 167.139 kb on + strand, within GFF5064at 167.139 kb on + strand, within GFF5064at 167.140 kb on - strand, within GFF5064at 167.140 kb on - strand, within GFF5064at 167.336 kb on + strandat 167.336 kb on + strandat 167.337 kb on - strandat 167.399 kb on + strandat 167.399 kb on + strandat 167.399 kb on + strandat 167.399 kb on + strandat 167.400 kb on - strandat 167.400 kb on - strandat 167.400 kb on - strandat 167.400 kb on - strandat 167.430 kb on + strandat 167.487 kb on + strand, within GFF5065at 167.487 kb on + strand, within GFF5065at 167.550 kb on + strand, within GFF5065at 167.550 kb on + strand, within GFF5065at 167.551 kb on - strand, within GFF5065at 167.794 kb on - strand, within GFF5065at 167.910 kb on + strand, within GFF5065at 167.970 kb on + strand, within GFF5065at 168.080 kb on + strandat 168.080 kb on + strandat 168.080 kb on + strandat 168.080 kb on + strandat 168.080 kb on + strandat 168.080 kb on + strandat 168.080 kb on + strandat 168.080 kb on + strandat 168.080 kb on + strandat 168.080 kb on + strandat 168.080 kb on + strandat 168.080 kb on + strandat 168.080 kb on + strandat 168.080 kb on + strandat 168.080 kb on + strandat 168.080 kb on + strandat 168.080 kb on + strandat 168.081 kb on - strandat 168.081 kb on - strandat 168.081 kb on - strandat 168.081 kb on - strandat 168.081 kb on - strandat 168.081 kb on - strandat 168.081 kb on - strandat 168.081 kb on - strandat 168.081 kb on - strandat 168.081 kb on - strandat 168.081 kb on - strandat 168.081 kb on - strandat 168.148 kb on + strandat 168.149 kb on - strandat 168.193 kb on + strand, within GFF5066at 168.193 kb on + strand, within GFF5066at 168.193 kb on + strand, within GFF5066at 168.193 kb on + strand, within GFF5066at 168.193 kb on + strand, within GFF5066at 168.193 kb on + strand, within GFF5066at 168.193 kb on + strand, within GFF5066at 168.194 kb on - strand, within GFF5066at 168.194 kb on - strand, within GFF5066at 168.194 kb on - strand, within GFF5066at 168.194 kb on - strand, within GFF5066at 168.194 kb on - strand, within GFF5066at 168.194 kb on - strand, within GFF5066at 168.194 kb on - strand, within GFF5066at 168.194 kb on - strand, within GFF5066at 168.296 kb on + strand, within GFF5066at 168.297 kb on - strand, within GFF5066at 168.297 kb on - strand, within GFF5066at 168.297 kb on - strand, within GFF5066at 168.297 kb on - strand, within GFF5066at 168.314 kb on + strand, within GFF5066at 168.314 kb on + strand, within GFF5066at 168.314 kb on + strand, within GFF5066at 168.314 kb on + strand, within GFF5066at 168.315 kb on - strand, within GFF5066at 168.315 kb on - strand, within GFF5066at 168.383 kb on + strand, within GFF5066

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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166,896 + GFF5064 0.28 +0.5
166,896 + GFF5064 0.28 +2.5
166,896 + GFF5064 0.28 -1.0
166,896 + GFF5064 0.28 -0.5
166,896 + GFF5064 0.28 -2.6
166,896 + GFF5064 0.28 -2.6
166,896 + GFF5064 0.28 -1.6
166,896 + GFF5064 0.28 +1.4
166,896 + GFF5064 0.28 -0.5
166,896 + GFF5064 0.28 +1.0
166,896 + GFF5064 0.28 -0.4
166,896 + GFF5064 0.28 -0.2
166,897 - GFF5064 0.28 -0.5
166,897 - GFF5064 0.28 +0.2
166,897 - GFF5064 0.28 -0.1
166,897 - GFF5064 0.28 +1.5
166,897 - GFF5064 0.28 -0.3
166,897 - GFF5064 0.28 -0.9
166,897 - GFF5064 0.28 +4.6
166,897 - GFF5064 0.28 +0.9
166,897 - GFF5064 0.28 +0.9
166,897 - GFF5064 0.28 +1.2
166,897 - GFF5064 0.28 +1.1
167,139 + GFF5064 0.63 -0.7
167,139 + GFF5064 0.63 -0.5
167,139 + GFF5064 0.63 +0.8
167,139 + GFF5064 0.63 +0.9
167,140 - GFF5064 0.63 +1.9
167,140 - GFF5064 0.63 +0.2
167,336 + +1.7
167,336 + +0.1
167,337 - -0.3
167,399 + -1.0
167,399 + -0.2
167,399 + +1.9
167,399 + -0.8
167,400 - -1.2
167,400 - -0.4
167,400 - +0.5
167,400 - -0.9
167,430 + -2.3
167,487 + GFF5065 0.12 -1.1
167,487 + GFF5065 0.12 -1.4
167,550 + GFF5065 0.21 -0.3
167,550 + GFF5065 0.21 -0.3
167,551 - GFF5065 0.21 -0.7
167,794 - GFF5065 0.57 -1.3
167,910 + GFF5065 0.74 -0.7
167,970 + GFF5065 0.83 -0.7
168,080 + +0.5
168,080 + -0.3
168,080 + -1.6
168,080 + -1.8
168,080 + -3.6
168,080 + -2.0
168,080 + -1.5
168,080 + -2.1
168,080 + -2.9
168,080 + -1.8
168,080 + -0.6
168,080 + -2.9
168,080 + -0.5
168,080 + -2.5
168,080 + -1.0
168,080 + -1.4
168,080 + -1.6
168,081 - +0.9
168,081 - -1.2
168,081 - -0.6
168,081 - -0.8
168,081 - -0.7
168,081 - -2.5
168,081 - -2.8
168,081 - -3.8
168,081 - -0.3
168,081 - -1.2
168,081 - -0.7
168,081 - +0.3
168,148 + -2.3
168,149 - -0.8
168,193 + GFF5066 0.11 +0.8
168,193 + GFF5066 0.11 +0.8
168,193 + GFF5066 0.11 -1.4
168,193 + GFF5066 0.11 -1.8
168,193 + GFF5066 0.11 -1.3
168,193 + GFF5066 0.11 +1.0
168,193 + GFF5066 0.11 -0.3
168,194 - GFF5066 0.12 +1.7
168,194 - GFF5066 0.12 -1.6
168,194 - GFF5066 0.12 -0.3
168,194 - GFF5066 0.12 -1.1
168,194 - GFF5066 0.12 +1.2
168,194 - GFF5066 0.12 +1.4
168,194 - GFF5066 0.12 +0.6
168,194 - GFF5066 0.12 -1.5
168,296 + GFF5066 0.24 +1.2
168,297 - GFF5066 0.24 -1.5
168,297 - GFF5066 0.24 +0.0
168,297 - GFF5066 0.24 -1.9
168,297 - GFF5066 0.24 -1.0
168,314 + GFF5066 0.26 +0.5
168,314 + GFF5066 0.26 +1.5
168,314 + GFF5066 0.26 +0.2
168,314 + GFF5066 0.26 -0.9
168,315 - GFF5066 0.27 +0.2
168,315 - GFF5066 0.27 +2.2
168,383 + GFF5066 0.35 -0.1

Or see this region's nucleotide sequence