Strain Fitness in Variovorax sp. SCN45 around GFF4952

Experiment: Community=guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=guar; Passage=4
47,836	+		GFF4951	0.40	+1.6
47,837	-		GFF4951	0.40	+0.1
47,848	+		GFF4951	0.41	+0.4
47,848	+		GFF4951	0.41	-1.4
47,849	-		GFF4951	0.41	+0.2
47,849	-		GFF4951	0.41	+0.2
47,849	-		GFF4951	0.41	+0.5
47,978	-		GFF4951	0.54	-1.4
47,978	-		GFF4951	0.54	+1.6
48,091	+		GFF4951	0.65	+0.1
48,314	+		GFF4951	0.88	-0.6
48,314	+		GFF4951	0.88	-0.8
48,478	+				-0.3
48,478	-				+0.8
48,479	-				-0.7
48,479	-				-1.0
48,479	-				+1.0
48,653	+		GFF4952	0.20	+0.4
48,653	+		GFF4952	0.20	-0.4
48,653	+		GFF4952	0.20	-0.1
48,654	-		GFF4952	0.20	+1.2
48,654	-		GFF4952	0.20	+1.1
48,654	-		GFF4952	0.20	+1.1
48,654	-		GFF4952	0.20	-0.1
48,734	+		GFF4952	0.30	+0.3
49,206	-		GFF4952	0.85	-0.9
49,307	+				-2.3
49,307	+				-1.8
49,307	+				-1.3
49,307	+				-1.9
49,307	+				+0.9
49,308	-				-3.4
49,331	+				-0.3
49,332	-				+0.3
49,375	-				+2.1
49,375	-				-1.8
49,475	+				+0.5
49,476	-				+0.5
49,476	-				-1.9
49,634	+				+0.5
49,634	+				-0.4
49,634	+				-0.1
49,634	+				-1.2
49,635	-				-0.3
49,850	+				+0.5
49,850	+				-0.4
49,850	+				-2.8
49,895	+				-1.1
49,895	+				-0.6
49,895	+				-1.9
49,896	-				+0.3
49,896	-				-1.1
49,970	+		GFF4953	0.11	+0.2
49,970	+		GFF4953	0.11	+0.9
49,970	+		GFF4953	0.11	-1.0
49,971	-		GFF4953	0.11	+0.9
50,117	+		GFF4953	0.14	-0.3
50,123	+		GFF4953	0.14	+0.2
50,124	-		GFF4953	0.14	+0.1
50,124	-		GFF4953	0.14	-1.2
50,124	-		GFF4953	0.14	+0.7