Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4917 and GFF4918 overlap by 4 nucleotides GFF4918 and GFF4919 are separated by 216 nucleotides GFF4919 and GFF4920 are separated by 10 nucleotides
GFF4917 - no description, at 10,116 to 11,918
GFF4917
GFF4918 - hypothetical protein, at 11,915 to 12,520
GFF4918
GFF4919 - hypothetical protein, at 12,737 to 13,396
GFF4919
GFF4920 - Isochorismatase family protein YecD, at 13,407 to 14,084
GFF4920
Position (kb) 11
12
13 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 11.096 kb on - strand, within GFF4917 at 11.096 kb on - strand, within GFF4917 at 11.096 kb on - strand, within GFF4917 at 11.096 kb on - strand, within GFF4917 at 11.313 kb on + strand, within GFF4917 at 11.313 kb on + strand, within GFF4917 at 11.314 kb on - strand, within GFF4917 at 11.314 kb on - strand, within GFF4917 at 11.314 kb on - strand, within GFF4917 at 11.383 kb on + strand, within GFF4917 at 11.383 kb on + strand, within GFF4917 at 11.383 kb on + strand, within GFF4917 at 11.384 kb on - strand, within GFF4917 at 11.384 kb on - strand, within GFF4917 at 11.384 kb on - strand, within GFF4917 at 11.384 kb on - strand, within GFF4917 at 11.384 kb on - strand, within GFF4917 at 11.384 kb on - strand, within GFF4917 at 11.384 kb on - strand, within GFF4917 at 11.384 kb on - strand, within GFF4917 at 12.065 kb on + strand, within GFF4918 at 12.144 kb on + strand, within GFF4918 at 12.144 kb on + strand, within GFF4918 at 12.144 kb on + strand, within GFF4918 at 12.144 kb on + strand, within GFF4918 at 12.144 kb on + strand, within GFF4918 at 12.144 kb on + strand, within GFF4918 at 12.145 kb on - strand, within GFF4918 at 12.145 kb on - strand, within GFF4918 at 12.145 kb on - strand, within GFF4918 at 12.300 kb on + strand, within GFF4918 at 12.301 kb on - strand, within GFF4918 at 12.301 kb on - strand, within GFF4918 at 12.301 kb on - strand, within GFF4918 at 12.301 kb on - strand, within GFF4918 at 12.301 kb on - strand, within GFF4918 at 12.414 kb on + strand, within GFF4918 at 12.414 kb on + strand, within GFF4918 at 12.414 kb on + strand, within GFF4918 at 12.415 kb on - strand, within GFF4918 at 12.415 kb on - strand, within GFF4918 at 12.415 kb on - strand, within GFF4918 at 12.415 kb on - strand, within GFF4918 at 12.415 kb on - strand, within GFF4918 at 12.453 kb on + strand, within GFF4918 at 12.453 kb on + strand, within GFF4918 at 12.454 kb on - strand, within GFF4918 at 12.454 kb on - strand, within GFF4918 at 12.454 kb on - strand, within GFF4918 at 12.511 kb on + strand at 12.511 kb on + strand at 12.511 kb on + strand at 12.511 kb on + strand at 12.511 kb on + strand at 12.512 kb on - strand at 12.512 kb on - strand at 12.512 kb on - strand at 12.525 kb on - strand at 12.525 kb on - strand at 12.587 kb on + strand at 12.587 kb on + strand at 12.620 kb on - strand at 12.720 kb on + strand at 13.010 kb on + strand, within GFF4919 at 13.010 kb on + strand, within GFF4919 at 13.010 kb on + strand, within GFF4919 at 13.010 kb on + strand, within GFF4919 at 13.011 kb on - strand, within GFF4919 at 13.011 kb on - strand, within GFF4919 at 13.011 kb on - strand, within GFF4919 at 13.011 kb on - strand, within GFF4919 at 13.011 kb on - strand, within GFF4919 at 13.271 kb on + strand, within GFF4919 at 13.271 kb on + strand, within GFF4919 at 13.271 kb on + strand, within GFF4919 at 13.271 kb on + strand, within GFF4919 at 13.271 kb on + strand, within GFF4919 at 13.271 kb on + strand, within GFF4919 at 13.271 kb on + strand, within GFF4919 at 13.271 kb on + strand, within GFF4919 at 13.271 kb on + strand, within GFF4919 at 13.271 kb on + strand, within GFF4919 at 13.271 kb on + strand, within GFF4919 at 13.271 kb on + strand, within GFF4919 at 13.271 kb on + strand, within GFF4919 at 13.271 kb on + strand, within GFF4919 at 13.271 kb on + strand, within GFF4919 at 13.271 kb on + strand, within GFF4919 at 13.272 kb on - strand, within GFF4919 at 13.272 kb on - strand, within GFF4919 at 13.272 kb on - strand, within GFF4919 at 13.272 kb on - strand, within GFF4919 at 13.272 kb on - strand, within GFF4919 at 13.272 kb on - strand, within GFF4919 at 13.272 kb on - strand, within GFF4919 at 13.272 kb on - strand, within GFF4919 at 13.272 kb on - strand, within GFF4919 at 13.272 kb on - strand, within GFF4919 at 13.272 kb on - strand, within GFF4919 at 13.272 kb on - strand, within GFF4919 at 13.272 kb on - strand, within GFF4919 at 13.272 kb on - strand, within GFF4919 at 13.272 kb on - strand, within GFF4919 at 13.380 kb on + strand at 13.380 kb on + strand at 13.380 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 11,096 - GFF4917 0.54 +0.7 11,096 - GFF4917 0.54 -1.7 11,096 - GFF4917 0.54 +0.2 11,096 - GFF4917 0.54 +0.3 11,313 + GFF4917 0.66 +1.6 11,313 + GFF4917 0.66 -1.5 11,314 - GFF4917 0.66 -1.4 11,314 - GFF4917 0.66 +0.8 11,314 - GFF4917 0.66 -1.5 11,383 + GFF4917 0.70 +0.6 11,383 + GFF4917 0.70 -0.5 11,383 + GFF4917 0.70 -0.7 11,384 - GFF4917 0.70 +0.9 11,384 - GFF4917 0.70 -0.7 11,384 - GFF4917 0.70 -2.7 11,384 - GFF4917 0.70 +0.3 11,384 - GFF4917 0.70 -1.6 11,384 - GFF4917 0.70 -1.8 11,384 - GFF4917 0.70 +1.5 11,384 - GFF4917 0.70 -0.7 12,065 + GFF4918 0.25 -0.1 12,144 + GFF4918 0.38 -2.0 12,144 + GFF4918 0.38 +0.4 12,144 + GFF4918 0.38 -2.2 12,144 + GFF4918 0.38 -2.9 12,144 + GFF4918 0.38 -1.4 12,144 + GFF4918 0.38 +1.5 12,145 - GFF4918 0.38 +0.2 12,145 - GFF4918 0.38 -3.6 12,145 - GFF4918 0.38 -0.5 12,300 + GFF4918 0.64 -0.7 12,301 - GFF4918 0.64 +0.2 12,301 - GFF4918 0.64 +2.4 12,301 - GFF4918 0.64 +1.3 12,301 - GFF4918 0.64 -1.3 12,301 - GFF4918 0.64 -2.0 12,414 + GFF4918 0.82 -2.3 12,414 + GFF4918 0.82 -1.7 12,414 + GFF4918 0.82 -2.2 12,415 - GFF4918 0.83 +0.0 12,415 - GFF4918 0.83 -0.6 12,415 - GFF4918 0.83 -0.8 12,415 - GFF4918 0.83 +0.4 12,415 - GFF4918 0.83 +0.9 12,453 + GFF4918 0.89 -1.7 12,453 + GFF4918 0.89 -0.8 12,454 - GFF4918 0.89 -0.5 12,454 - GFF4918 0.89 +1.1 12,454 - GFF4918 0.89 -0.4 12,511 + -0.5 12,511 + -1.0 12,511 + -1.0 12,511 + +1.2 12,511 + +0.2 12,512 - +0.5 12,512 - +1.0 12,512 - +0.9 12,525 - -2.3 12,525 - +0.6 12,587 + -0.8 12,587 + -1.2 12,620 - -2.2 12,720 + -0.9 13,010 + GFF4919 0.41 +1.0 13,010 + GFF4919 0.41 -0.3 13,010 + GFF4919 0.41 +0.9 13,010 + GFF4919 0.41 -2.4 13,011 - GFF4919 0.42 -0.3 13,011 - GFF4919 0.42 -1.3 13,011 - GFF4919 0.42 -0.7 13,011 - GFF4919 0.42 -0.2 13,011 - GFF4919 0.42 -0.5 13,271 + GFF4919 0.81 +0.2 13,271 + GFF4919 0.81 +0.2 13,271 + GFF4919 0.81 -2.4 13,271 + GFF4919 0.81 -0.5 13,271 + GFF4919 0.81 +0.5 13,271 + GFF4919 0.81 -0.2 13,271 + GFF4919 0.81 +2.5 13,271 + GFF4919 0.81 +0.3 13,271 + GFF4919 0.81 +0.3 13,271 + GFF4919 0.81 +1.3 13,271 + GFF4919 0.81 -0.7 13,271 + GFF4919 0.81 +0.6 13,271 + GFF4919 0.81 -0.7 13,271 + GFF4919 0.81 +0.9 13,271 + GFF4919 0.81 +0.3 13,271 + GFF4919 0.81 +0.1 13,272 - GFF4919 0.81 +0.9 13,272 - GFF4919 0.81 -2.0 13,272 - GFF4919 0.81 +0.2 13,272 - GFF4919 0.81 -0.3 13,272 - GFF4919 0.81 +0.2 13,272 - GFF4919 0.81 -1.7 13,272 - GFF4919 0.81 +0.5 13,272 - GFF4919 0.81 -0.8 13,272 - GFF4919 0.81 +0.3 13,272 - GFF4919 0.81 -0.3 13,272 - GFF4919 0.81 -1.6 13,272 - GFF4919 0.81 -1.6 13,272 - GFF4919 0.81 -0.3 13,272 - GFF4919 0.81 -1.6 13,272 - GFF4919 0.81 -0.4 13,380 + -3.2 13,380 + +2.7 13,380 + -0.2
Or see this region's nucleotide sequence