Strain Fitness in Variovorax sp. SCN45 around GFF484

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF483 and GFF484 are separated by 1 nucleotidesGFF484 and GFF485 are separated by 18 nucleotidesGFF485 and GFF486 are separated by 31 nucleotides GFF483 - Fumarate hydratase class I, aerobic (EC 4.2.1.2), at 522,042 to 523,595 GFF483 GFF484 - Glutamate racemase (EC 5.1.1.3), at 523,597 to 524,397 GFF484 GFF485 - hypothetical protein, at 524,416 to 525,201 GFF485 GFF486 - FIG00582348: hypothetical protein, at 525,233 to 525,874 GFF486 Position (kb) 523 524 525Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 522.759 kb on + strand, within GFF483at 522.759 kb on + strand, within GFF483at 522.759 kb on + strand, within GFF483at 522.759 kb on + strand, within GFF483at 522.760 kb on - strand, within GFF483at 522.760 kb on - strand, within GFF483at 522.760 kb on - strand, within GFF483at 522.760 kb on - strand, within GFF483at 522.760 kb on - strand, within GFF483at 522.840 kb on + strand, within GFF483at 522.840 kb on + strand, within GFF483at 522.840 kb on + strand, within GFF483at 522.840 kb on + strand, within GFF483at 522.840 kb on + strand, within GFF483at 522.840 kb on + strand, within GFF483at 522.840 kb on + strand, within GFF483at 522.840 kb on + strand, within GFF483at 522.840 kb on + strand, within GFF483at 522.841 kb on - strand, within GFF483at 522.841 kb on - strand, within GFF483at 522.841 kb on - strand, within GFF483at 522.841 kb on - strand, within GFF483at 522.841 kb on - strand, within GFF483at 522.841 kb on - strand, within GFF483at 522.841 kb on - strand, within GFF483at 522.841 kb on - strand, within GFF483at 522.841 kb on - strand, within GFF483at 522.841 kb on - strand, within GFF483at 522.936 kb on + strand, within GFF483at 522.936 kb on + strand, within GFF483at 522.937 kb on - strand, within GFF483at 522.937 kb on - strand, within GFF483at 523.176 kb on + strand, within GFF483at 523.176 kb on + strand, within GFF483at 523.176 kb on + strand, within GFF483at 523.176 kb on + strand, within GFF483at 523.176 kb on + strand, within GFF483at 523.176 kb on + strand, within GFF483at 523.176 kb on + strand, within GFF483at 523.176 kb on + strand, within GFF483at 523.176 kb on + strand, within GFF483at 523.176 kb on + strand, within GFF483at 523.176 kb on + strand, within GFF483at 523.176 kb on + strand, within GFF483at 523.176 kb on + strand, within GFF483at 523.176 kb on + strand, within GFF483at 523.176 kb on + strand, within GFF483at 523.176 kb on + strand, within GFF483at 523.176 kb on + strand, within GFF483at 523.176 kb on + strand, within GFF483at 523.177 kb on - strand, within GFF483at 523.177 kb on - strand, within GFF483at 523.177 kb on - strand, within GFF483at 523.177 kb on - strand, within GFF483at 523.177 kb on - strand, within GFF483at 523.177 kb on - strand, within GFF483at 523.177 kb on - strand, within GFF483at 523.177 kb on - strand, within GFF483at 523.177 kb on - strand, within GFF483at 523.177 kb on - strand, within GFF483at 523.177 kb on - strand, within GFF483at 523.177 kb on - strand, within GFF483at 523.179 kb on + strand, within GFF483at 523.179 kb on + strand, within GFF483at 523.179 kb on + strand, within GFF483at 523.179 kb on + strand, within GFF483at 523.179 kb on + strand, within GFF483at 523.179 kb on + strand, within GFF483at 523.179 kb on + strand, within GFF483at 523.179 kb on + strand, within GFF483at 523.179 kb on + strand, within GFF483at 523.180 kb on - strand, within GFF483at 523.180 kb on - strand, within GFF483at 523.180 kb on - strand, within GFF483at 523.180 kb on - strand, within GFF483at 523.180 kb on - strand, within GFF483at 523.180 kb on - strand, within GFF483at 523.180 kb on - strand, within GFF483at 523.359 kb on + strand, within GFF483at 523.359 kb on + strand, within GFF483at 523.359 kb on + strand, within GFF483at 523.359 kb on + strand, within GFF483at 523.359 kb on + strand, within GFF483at 523.360 kb on - strand, within GFF483at 523.360 kb on - strand, within GFF483at 523.360 kb on - strand, within GFF483at 523.360 kb on - strand, within GFF483at 523.360 kb on - strand, within GFF483at 523.360 kb on - strand, within GFF483at 523.386 kb on + strand, within GFF483at 523.387 kb on - strand, within GFF483at 523.387 kb on - strand, within GFF483at 523.387 kb on - strand, within GFF483at 523.387 kb on - strand, within GFF483at 523.455 kb on + strandat 523.455 kb on + strandat 523.455 kb on + strandat 523.456 kb on - strandat 523.456 kb on - strandat 523.456 kb on - strandat 523.456 kb on - strandat 523.607 kb on + strandat 524.791 kb on + strand, within GFF485at 524.791 kb on + strand, within GFF485at 524.791 kb on + strand, within GFF485at 524.791 kb on + strand, within GFF485at 524.791 kb on + strand, within GFF485at 524.792 kb on - strand, within GFF485at 524.792 kb on - strand, within GFF485at 524.792 kb on - strand, within GFF485at 524.792 kb on - strand, within GFF485at 524.792 kb on - strand, within GFF485at 524.792 kb on - strand, within GFF485at 524.890 kb on + strand, within GFF485at 524.890 kb on + strand, within GFF485at 524.890 kb on + strand, within GFF485at 524.890 kb on + strand, within GFF485at 524.890 kb on + strand, within GFF485at 524.890 kb on + strand, within GFF485at 524.890 kb on + strand, within GFF485at 524.890 kb on + strand, within GFF485at 524.890 kb on + strand, within GFF485at 524.890 kb on + strand, within GFF485at 524.891 kb on - strand, within GFF485at 524.891 kb on - strand, within GFF485at 524.891 kb on - strand, within GFF485at 524.891 kb on - strand, within GFF485at 524.891 kb on - strand, within GFF485at 525.148 kb on + strandat 525.148 kb on + strandat 525.148 kb on + strandat 525.148 kb on + strandat 525.148 kb on + strandat 525.149 kb on - strandat 525.149 kb on - strandat 525.149 kb on - strandat 525.149 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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522,759 + GFF483 0.46 -2.8
522,759 + GFF483 0.46 +2.3
522,759 + GFF483 0.46 +1.8
522,759 + GFF483 0.46 -1.6
522,760 - GFF483 0.46 -0.6
522,760 - GFF483 0.46 +0.0
522,760 - GFF483 0.46 -1.4
522,760 - GFF483 0.46 -0.2
522,760 - GFF483 0.46 -1.9
522,840 + GFF483 0.51 -1.1
522,840 + GFF483 0.51 +1.5
522,840 + GFF483 0.51 -0.4
522,840 + GFF483 0.51 -0.4
522,840 + GFF483 0.51 -0.4
522,840 + GFF483 0.51 -0.4
522,840 + GFF483 0.51 -3.8
522,840 + GFF483 0.51 -1.0
522,840 + GFF483 0.51 -1.6
522,841 - GFF483 0.51 -0.6
522,841 - GFF483 0.51 -1.0
522,841 - GFF483 0.51 -1.8
522,841 - GFF483 0.51 -0.2
522,841 - GFF483 0.51 -2.4
522,841 - GFF483 0.51 +0.0
522,841 - GFF483 0.51 -1.2
522,841 - GFF483 0.51 -2.2
522,841 - GFF483 0.51 -0.2
522,841 - GFF483 0.51 +0.2
522,936 + GFF483 0.58 -1.9
522,936 + GFF483 0.58 +0.8
522,937 - GFF483 0.58 -3.0
522,937 - GFF483 0.58 -0.7
523,176 + GFF483 0.73 -0.6
523,176 + GFF483 0.73 -0.1
523,176 + GFF483 0.73 -0.8
523,176 + GFF483 0.73 -1.0
523,176 + GFF483 0.73 +0.1
523,176 + GFF483 0.73 -1.1
523,176 + GFF483 0.73 +1.0
523,176 + GFF483 0.73 -2.3
523,176 + GFF483 0.73 -0.1
523,176 + GFF483 0.73 -2.3
523,176 + GFF483 0.73 -0.7
523,176 + GFF483 0.73 +1.1
523,176 + GFF483 0.73 -2.9
523,176 + GFF483 0.73 +0.8
523,176 + GFF483 0.73 -2.0
523,176 + GFF483 0.73 +0.1
523,176 + GFF483 0.73 -2.1
523,176 + GFF483 0.73 +0.2
523,177 - GFF483 0.73 -2.9
523,177 - GFF483 0.73 -1.4
523,177 - GFF483 0.73 -0.2
523,177 - GFF483 0.73 -2.6
523,177 - GFF483 0.73 -1.4
523,177 - GFF483 0.73 -0.8
523,177 - GFF483 0.73 -0.4
523,177 - GFF483 0.73 -0.7
523,177 - GFF483 0.73 -1.8
523,177 - GFF483 0.73 +0.1
523,177 - GFF483 0.73 -0.7
523,177 - GFF483 0.73 -0.2
523,179 + GFF483 0.73 -1.0
523,179 + GFF483 0.73 -1.2
523,179 + GFF483 0.73 +0.3
523,179 + GFF483 0.73 -0.8
523,179 + GFF483 0.73 -0.4
523,179 + GFF483 0.73 -2.2
523,179 + GFF483 0.73 -0.4
523,179 + GFF483 0.73 -2.3
523,179 + GFF483 0.73 -1.3
523,180 - GFF483 0.73 -0.3
523,180 - GFF483 0.73 -2.2
523,180 - GFF483 0.73 -0.2
523,180 - GFF483 0.73 -1.0
523,180 - GFF483 0.73 -1.5
523,180 - GFF483 0.73 -2.4
523,180 - GFF483 0.73 -1.9
523,359 + GFF483 0.85 +0.5
523,359 + GFF483 0.85 -0.8
523,359 + GFF483 0.85 -0.4
523,359 + GFF483 0.85 -1.5
523,359 + GFF483 0.85 +0.2
523,360 - GFF483 0.85 +0.2
523,360 - GFF483 0.85 -1.9
523,360 - GFF483 0.85 -4.8
523,360 - GFF483 0.85 +1.2
523,360 - GFF483 0.85 -0.8
523,360 - GFF483 0.85 +0.4
523,386 + GFF483 0.86 -0.0
523,387 - GFF483 0.87 +2.2
523,387 - GFF483 0.87 -2.0
523,387 - GFF483 0.87 -1.6
523,387 - GFF483 0.87 -0.9
523,455 + -0.7
523,455 + -0.0
523,455 + -0.2
523,456 - +0.7
523,456 - -1.7
523,456 - -0.5
523,456 - +0.8
523,607 + -2.9
524,791 + GFF485 0.48 -2.7
524,791 + GFF485 0.48 -1.7
524,791 + GFF485 0.48 -1.4
524,791 + GFF485 0.48 -0.7
524,791 + GFF485 0.48 +1.8
524,792 - GFF485 0.48 -0.0
524,792 - GFF485 0.48 +4.1
524,792 - GFF485 0.48 -1.0
524,792 - GFF485 0.48 +1.5
524,792 - GFF485 0.48 -0.3
524,792 - GFF485 0.48 +1.7
524,890 + GFF485 0.60 -1.7
524,890 + GFF485 0.60 -1.0
524,890 + GFF485 0.60 -2.8
524,890 + GFF485 0.60 +1.1
524,890 + GFF485 0.60 +0.4
524,890 + GFF485 0.60 -0.8
524,890 + GFF485 0.60 +2.0
524,890 + GFF485 0.60 +1.5
524,890 + GFF485 0.60 +0.1
524,890 + GFF485 0.60 -1.3
524,891 - GFF485 0.60 +0.2
524,891 - GFF485 0.60 +0.3
524,891 - GFF485 0.60 -1.2
524,891 - GFF485 0.60 -0.2
524,891 - GFF485 0.60 +1.3
525,148 + +1.0
525,148 + +1.5
525,148 + -1.7
525,148 + -3.5
525,148 + +0.1
525,149 - -1.0
525,149 - -2.1
525,149 - -1.2
525,149 - +2.8

Or see this region's nucleotide sequence