Strain Fitness in Variovorax sp. SCN45 around GFF4821

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4820 and GFF4821 are separated by 158 nucleotidesGFF4821 and GFF4822 are separated by 94 nucleotides GFF4820 - BUG/TctC family periplasmic protein, at 191,668 to 192,660 GFF4820 GFF4821 - Transcriptional regulator, AcrR family, at 192,819 to 193,493 GFF4821 GFF4822 - Thiamine pyrophosphate-requiring enzymes, at 193,588 to 195,318 GFF4822 Position (kb) 192 193 194Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 192.038 kb on + strand, within GFF4820at 192.038 kb on + strand, within GFF4820at 192.038 kb on + strand, within GFF4820at 192.038 kb on + strand, within GFF4820at 192.039 kb on - strand, within GFF4820at 192.039 kb on - strand, within GFF4820at 192.039 kb on - strand, within GFF4820at 192.039 kb on - strand, within GFF4820at 192.039 kb on - strand, within GFF4820at 192.039 kb on - strand, within GFF4820at 192.039 kb on - strand, within GFF4820at 192.042 kb on - strand, within GFF4820at 192.381 kb on - strand, within GFF4820at 192.729 kb on - strandat 192.766 kb on - strandat 192.831 kb on + strandat 192.832 kb on + strandat 192.832 kb on + strandat 192.832 kb on + strandat 192.833 kb on - strandat 192.937 kb on + strand, within GFF4821at 192.937 kb on + strand, within GFF4821at 192.938 kb on - strand, within GFF4821at 192.943 kb on + strand, within GFF4821at 192.943 kb on + strand, within GFF4821at 192.943 kb on + strand, within GFF4821at 192.943 kb on + strand, within GFF4821at 192.944 kb on - strand, within GFF4821at 192.967 kb on + strand, within GFF4821at 192.967 kb on + strand, within GFF4821at 192.967 kb on + strand, within GFF4821at 192.968 kb on - strand, within GFF4821at 193.035 kb on + strand, within GFF4821at 193.150 kb on + strand, within GFF4821at 193.151 kb on - strand, within GFF4821at 193.151 kb on - strand, within GFF4821at 193.151 kb on - strand, within GFF4821at 193.151 kb on - strand, within GFF4821at 193.153 kb on + strand, within GFF4821at 193.153 kb on + strand, within GFF4821at 193.153 kb on + strand, within GFF4821at 193.154 kb on - strand, within GFF4821at 193.247 kb on - strand, within GFF4821at 193.247 kb on - strand, within GFF4821at 193.294 kb on + strand, within GFF4821at 193.297 kb on + strand, within GFF4821at 193.297 kb on + strand, within GFF4821at 193.298 kb on - strand, within GFF4821at 193.298 kb on - strand, within GFF4821at 193.298 kb on - strand, within GFF4821at 193.300 kb on + strand, within GFF4821at 193.300 kb on + strand, within GFF4821at 193.300 kb on + strand, within GFF4821at 193.300 kb on + strand, within GFF4821at 193.301 kb on - strand, within GFF4821at 193.301 kb on - strand, within GFF4821at 193.301 kb on - strand, within GFF4821at 193.301 kb on - strand, within GFF4821at 193.301 kb on - strand, within GFF4821at 193.301 kb on - strand, within GFF4821at 193.301 kb on - strand, within GFF4821at 193.301 kb on - strand, within GFF4821at 193.537 kb on - strandat 193.549 kb on + strandat 193.549 kb on + strandat 193.549 kb on + strandat 193.550 kb on - strandat 193.550 kb on - strandat 193.550 kb on - strandat 193.569 kb on - strandat 193.593 kb on + strandat 193.593 kb on + strandat 193.593 kb on + strandat 193.593 kb on + strandat 193.593 kb on + strandat 193.593 kb on + strandat 193.593 kb on + strandat 193.593 kb on + strandat 193.593 kb on + strandat 193.593 kb on + strandat 193.594 kb on - strandat 193.594 kb on - strandat 193.651 kb on - strandat 193.708 kb on + strandat 193.709 kb on - strandat 193.785 kb on + strand, within GFF4822at 193.968 kb on + strand, within GFF4822at 193.968 kb on + strand, within GFF4822at 193.969 kb on - strand, within GFF4822at 194.026 kb on + strand, within GFF4822at 194.026 kb on + strand, within GFF4822at 194.026 kb on + strand, within GFF4822at 194.026 kb on + strand, within GFF4822at 194.027 kb on - strand, within GFF4822at 194.027 kb on - strand, within GFF4822at 194.027 kb on - strand, within GFF4822at 194.178 kb on + strand, within GFF4822at 194.179 kb on - strand, within GFF4822at 194.179 kb on - strand, within GFF4822at 194.179 kb on - strand, within GFF4822at 194.348 kb on - strand, within GFF4822at 194.458 kb on + strand, within GFF4822

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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192,038 + GFF4820 0.37 -0.6
192,038 + GFF4820 0.37 -2.0
192,038 + GFF4820 0.37 +0.1
192,038 + GFF4820 0.37 -2.0
192,039 - GFF4820 0.37 -0.6
192,039 - GFF4820 0.37 -1.8
192,039 - GFF4820 0.37 -1.0
192,039 - GFF4820 0.37 -0.2
192,039 - GFF4820 0.37 +2.1
192,039 - GFF4820 0.37 -0.6
192,039 - GFF4820 0.37 +2.3
192,042 - GFF4820 0.38 -2.3
192,381 - GFF4820 0.72 -0.1
192,729 - -0.2
192,766 - -2.5
192,831 + -1.4
192,832 + -0.4
192,832 + +1.3
192,832 + -2.6
192,833 - -3.1
192,937 + GFF4821 0.17 -0.1
192,937 + GFF4821 0.17 -2.8
192,938 - GFF4821 0.18 -2.2
192,943 + GFF4821 0.18 +0.2
192,943 + GFF4821 0.18 -0.2
192,943 + GFF4821 0.18 -0.5
192,943 + GFF4821 0.18 +1.3
192,944 - GFF4821 0.19 -1.9
192,967 + GFF4821 0.22 -3.0
192,967 + GFF4821 0.22 -3.0
192,967 + GFF4821 0.22 -1.3
192,968 - GFF4821 0.22 -2.6
193,035 + GFF4821 0.32 -1.6
193,150 + GFF4821 0.49 +0.2
193,151 - GFF4821 0.49 -1.5
193,151 - GFF4821 0.49 -2.0
193,151 - GFF4821 0.49 -1.9
193,151 - GFF4821 0.49 -1.3
193,153 + GFF4821 0.49 -2.9
193,153 + GFF4821 0.49 -2.3
193,153 + GFF4821 0.49 -0.1
193,154 - GFF4821 0.50 -2.4
193,247 - GFF4821 0.63 -0.4
193,247 - GFF4821 0.63 -0.4
193,294 + GFF4821 0.70 -0.2
193,297 + GFF4821 0.71 -2.7
193,297 + GFF4821 0.71 -1.9
193,298 - GFF4821 0.71 -1.6
193,298 - GFF4821 0.71 +0.2
193,298 - GFF4821 0.71 -1.9
193,300 + GFF4821 0.71 +0.5
193,300 + GFF4821 0.71 -1.1
193,300 + GFF4821 0.71 -1.5
193,300 + GFF4821 0.71 -0.8
193,301 - GFF4821 0.71 -0.5
193,301 - GFF4821 0.71 -0.9
193,301 - GFF4821 0.71 -2.6
193,301 - GFF4821 0.71 -0.3
193,301 - GFF4821 0.71 -1.4
193,301 - GFF4821 0.71 -3.2
193,301 - GFF4821 0.71 -1.8
193,301 - GFF4821 0.71 -0.3
193,537 - +0.1
193,549 + +2.1
193,549 + -0.7
193,549 + -0.7
193,550 - -1.1
193,550 - -0.0
193,550 - -1.3
193,569 - -0.7
193,593 + -0.7
193,593 + -0.4
193,593 + -1.9
193,593 + +0.2
193,593 + -2.0
193,593 + +0.3
193,593 + +1.0
193,593 + -1.1
193,593 + +0.8
193,593 + -2.0
193,594 - +2.2
193,594 - -0.7
193,651 - -2.6
193,708 + +0.4
193,709 - -1.6
193,785 + GFF4822 0.11 -2.6
193,968 + GFF4822 0.22 +1.9
193,968 + GFF4822 0.22 +1.8
193,969 - GFF4822 0.22 -0.4
194,026 + GFF4822 0.25 -1.2
194,026 + GFF4822 0.25 -2.0
194,026 + GFF4822 0.25 -3.2
194,026 + GFF4822 0.25 -1.1
194,027 - GFF4822 0.25 -1.7
194,027 - GFF4822 0.25 -0.5
194,027 - GFF4822 0.25 +1.5
194,178 + GFF4822 0.34 +1.9
194,179 - GFF4822 0.34 -1.4
194,179 - GFF4822 0.34 -4.1
194,179 - GFF4822 0.34 -1.8
194,348 - GFF4822 0.44 -1.5
194,458 + GFF4822 0.50 +0.2

Or see this region's nucleotide sequence