Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4801 and GFF4802 are separated by 82 nucleotides GFF4802 and GFF4803 are separated by 153 nucleotides GFF4803 and GFF4804 overlap by 4 nucleotides GFF4804 and GFF4805 are separated by 45 nucleotides
GFF4801 - DedA protein, at 172,147 to 172,815
GFF4801
GFF4802 - Osmotically-inducible lipoprotein OsmB, at 172,898 to 173,185
GFF4802
GFF4803 - N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28), at 173,339 to 174,829
GFF4803
GFF4804 - tRNA threonylcarbamoyladenosine biosynthesis protein TsaE, at 174,826 to 175,383
GFF4804
GFF4805 - Epoxyqueuosine reductase (EC 1.17.99.6) QueG, at 175,429 to 176,391
GFF4805
Position (kb) 173
174
175 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 172.352 kb on - strand, within GFF4801 at 172.376 kb on + strand, within GFF4801 at 172.408 kb on + strand, within GFF4801 at 172.409 kb on - strand, within GFF4801 at 172.409 kb on - strand, within GFF4801 at 172.409 kb on - strand, within GFF4801 at 172.409 kb on - strand, within GFF4801 at 172.409 kb on - strand, within GFF4801 at 172.423 kb on + strand, within GFF4801 at 172.423 kb on + strand, within GFF4801 at 172.424 kb on - strand, within GFF4801 at 172.424 kb on - strand, within GFF4801 at 172.424 kb on - strand, within GFF4801 at 172.501 kb on + strand, within GFF4801 at 172.501 kb on + strand, within GFF4801 at 172.501 kb on + strand, within GFF4801 at 172.502 kb on - strand, within GFF4801 at 172.510 kb on + strand, within GFF4801 at 172.511 kb on - strand, within GFF4801 at 172.615 kb on + strand, within GFF4801 at 172.615 kb on + strand, within GFF4801 at 172.615 kb on + strand, within GFF4801 at 172.616 kb on - strand, within GFF4801 at 172.616 kb on - strand, within GFF4801 at 172.616 kb on - strand, within GFF4801 at 172.666 kb on + strand, within GFF4801 at 172.667 kb on - strand, within GFF4801 at 172.667 kb on - strand, within GFF4801 at 172.753 kb on + strand at 172.753 kb on + strand at 172.753 kb on + strand at 172.753 kb on + strand at 172.753 kb on + strand at 172.753 kb on + strand at 172.753 kb on + strand at 172.753 kb on + strand at 172.753 kb on + strand at 172.753 kb on + strand at 172.753 kb on + strand at 172.754 kb on - strand at 172.754 kb on - strand at 172.754 kb on - strand at 172.754 kb on - strand at 172.754 kb on - strand at 172.754 kb on - strand at 172.754 kb on - strand at 172.754 kb on - strand at 172.902 kb on + strand at 172.902 kb on + strand at 172.902 kb on + strand at 172.902 kb on + strand at 172.902 kb on + strand at 172.902 kb on + strand at 172.903 kb on - strand at 172.903 kb on - strand at 172.903 kb on - strand at 172.903 kb on - strand at 172.923 kb on + strand at 172.924 kb on + strand at 172.926 kb on + strand at 172.926 kb on + strand at 172.927 kb on - strand, within GFF4802 at 172.927 kb on - strand, within GFF4802 at 172.959 kb on + strand, within GFF4802 at 172.959 kb on + strand, within GFF4802 at 172.959 kb on + strand, within GFF4802 at 172.959 kb on + strand, within GFF4802 at 172.959 kb on + strand, within GFF4802 at 172.959 kb on + strand, within GFF4802 at 172.959 kb on + strand, within GFF4802 at 172.959 kb on + strand, within GFF4802 at 172.959 kb on + strand, within GFF4802 at 172.960 kb on - strand, within GFF4802 at 172.960 kb on - strand, within GFF4802 at 172.960 kb on - strand, within GFF4802 at 172.960 kb on - strand, within GFF4802 at 172.960 kb on - strand, within GFF4802 at 172.960 kb on - strand, within GFF4802 at 172.960 kb on - strand, within GFF4802 at 172.960 kb on - strand, within GFF4802 at 172.960 kb on - strand, within GFF4802 at 172.960 kb on - strand, within GFF4802 at 172.960 kb on - strand, within GFF4802 at 172.960 kb on - strand, within GFF4802 at 172.962 kb on + strand, within GFF4802 at 172.962 kb on + strand, within GFF4802 at 172.962 kb on + strand, within GFF4802 at 172.962 kb on + strand, within GFF4802 at 172.962 kb on + strand, within GFF4802 at 172.962 kb on + strand, within GFF4802 at 172.962 kb on + strand, within GFF4802 at 172.962 kb on + strand, within GFF4802 at 172.962 kb on + strand, within GFF4802 at 172.962 kb on + strand, within GFF4802 at 172.962 kb on + strand, within GFF4802 at 172.963 kb on - strand, within GFF4802 at 172.963 kb on - strand, within GFF4802 at 172.963 kb on - strand, within GFF4802 at 172.963 kb on - strand, within GFF4802 at 172.963 kb on - strand, within GFF4802 at 173.059 kb on + strand, within GFF4802 at 173.078 kb on + strand, within GFF4802 at 173.078 kb on + strand, within GFF4802 at 173.134 kb on + strand, within GFF4802 at 173.235 kb on + strand at 173.235 kb on + strand at 173.236 kb on - strand at 173.236 kb on - strand at 173.236 kb on - strand at 173.245 kb on + strand at 173.245 kb on + strand at 173.245 kb on + strand at 173.245 kb on + strand at 173.245 kb on + strand at 173.245 kb on + strand at 173.245 kb on + strand at 173.246 kb on - strand at 173.246 kb on - strand at 173.246 kb on - strand at 173.246 kb on - strand at 173.246 kb on - strand at 173.246 kb on - strand at 173.246 kb on - strand at 173.318 kb on + strand at 173.382 kb on + strand at 173.383 kb on - strand at 174.130 kb on + strand, within GFF4803 at 174.130 kb on + strand, within GFF4803 at 174.130 kb on + strand, within GFF4803 at 174.130 kb on + strand, within GFF4803 at 174.296 kb on - strand, within GFF4803 at 174.296 kb on - strand, within GFF4803 at 174.296 kb on - strand, within GFF4803 at 174.296 kb on - strand, within GFF4803 at 174.296 kb on - strand, within GFF4803 at 174.296 kb on - strand, within GFF4803 at 174.414 kb on + strand, within GFF4803 at 174.415 kb on - strand, within GFF4803 at 174.441 kb on + strand, within GFF4803 at 174.441 kb on + strand, within GFF4803 at 174.442 kb on - strand, within GFF4803 at 174.552 kb on + strand, within GFF4803 at 174.552 kb on + strand, within GFF4803 at 174.552 kb on + strand, within GFF4803 at 174.552 kb on + strand, within GFF4803 at 174.552 kb on + strand, within GFF4803 at 174.552 kb on + strand, within GFF4803 at 174.553 kb on - strand, within GFF4803 at 174.553 kb on - strand, within GFF4803 at 174.553 kb on - strand, within GFF4803 at 174.553 kb on - strand, within GFF4803 at 174.553 kb on - strand, within GFF4803 at 174.553 kb on - strand, within GFF4803 at 174.553 kb on - strand, within GFF4803 at 174.554 kb on - strand, within GFF4803 at 174.702 kb on + strand at 174.702 kb on + strand at 174.702 kb on + strand at 174.702 kb on + strand at 174.703 kb on - strand at 174.703 kb on - strand at 174.703 kb on - strand at 174.703 kb on - strand at 175.306 kb on + strand, within GFF4804 at 175.306 kb on + strand, within GFF4804 at 175.306 kb on + strand, within GFF4804 at 175.348 kb on - strand at 175.348 kb on - strand at 175.407 kb on - strand at 175.407 kb on - strand at 175.407 kb on - strand at 175.468 kb on + strand at 175.468 kb on + strand at 175.468 kb on + strand at 175.468 kb on + strand at 175.468 kb on + strand at 175.468 kb on + strand at 175.468 kb on + strand at 175.468 kb on + strand at 175.468 kb on + strand at 175.468 kb on + strand at 175.468 kb on + strand at 175.468 kb on + strand at 175.468 kb on + strand at 175.468 kb on + strand at 175.468 kb on + strand at 175.469 kb on - strand at 175.469 kb on - strand at 175.469 kb on - strand at 175.552 kb on + strand, within GFF4805 at 175.552 kb on + strand, within GFF4805 at 175.552 kb on + strand, within GFF4805 at 175.552 kb on + strand, within GFF4805 at 175.552 kb on + strand, within GFF4805 at 175.553 kb on - strand, within GFF4805 at 175.553 kb on - strand, within GFF4805 at 175.553 kb on - strand, within GFF4805 at 175.553 kb on - strand, within GFF4805 at 175.553 kb on - strand, within GFF4805 at 175.553 kb on - strand, within GFF4805 at 175.636 kb on + strand, within GFF4805 at 175.636 kb on + strand, within GFF4805 at 175.636 kb on + strand, within GFF4805 at 175.637 kb on - strand, within GFF4805 at 175.637 kb on - strand, within GFF4805 at 175.637 kb on - strand, within GFF4805 at 175.637 kb on - strand, within GFF4805 at 175.637 kb on - strand, within GFF4805 at 175.637 kb on - strand, within GFF4805 at 175.637 kb on - strand, within GFF4805 at 175.637 kb on - strand, within GFF4805 at 175.637 kb on - strand, within GFF4805 at 175.637 kb on - strand, within GFF4805 at 175.637 kb on - strand, within GFF4805 at 175.637 kb on - strand, within GFF4805 at 175.637 kb on - strand, within GFF4805 at 175.654 kb on + strand, within GFF4805 at 175.654 kb on + strand, within GFF4805 at 175.654 kb on + strand, within GFF4805 at 175.654 kb on + strand, within GFF4805 at 175.655 kb on - strand, within GFF4805 at 175.655 kb on - strand, within GFF4805 at 175.655 kb on - strand, within GFF4805 at 175.655 kb on - strand, within GFF4805 at 175.655 kb on - strand, within GFF4805 at 175.655 kb on - strand, within GFF4805
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 172,352 - GFF4801 0.31 -0.6 172,376 + GFF4801 0.34 -1.7 172,408 + GFF4801 0.39 +0.3 172,409 - GFF4801 0.39 -0.9 172,409 - GFF4801 0.39 +1.5 172,409 - GFF4801 0.39 +1.6 172,409 - GFF4801 0.39 -0.7 172,409 - GFF4801 0.39 +1.5 172,423 + GFF4801 0.41 -0.9 172,423 + GFF4801 0.41 +0.3 172,424 - GFF4801 0.41 -1.4 172,424 - GFF4801 0.41 +1.4 172,424 - GFF4801 0.41 -1.8 172,501 + GFF4801 0.53 +0.3 172,501 + GFF4801 0.53 +0.6 172,501 + GFF4801 0.53 +0.2 172,502 - GFF4801 0.53 +1.0 172,510 + GFF4801 0.54 +1.5 172,511 - GFF4801 0.54 -1.0 172,615 + GFF4801 0.70 -0.7 172,615 + GFF4801 0.70 -0.7 172,615 + GFF4801 0.70 +1.1 172,616 - GFF4801 0.70 -0.7 172,616 - GFF4801 0.70 -0.9 172,616 - GFF4801 0.70 +2.4 172,666 + GFF4801 0.78 -0.5 172,667 - GFF4801 0.78 -1.4 172,667 - GFF4801 0.78 -2.3 172,753 + -1.6 172,753 + +2.1 172,753 + +0.7 172,753 + -0.8 172,753 + +1.3 172,753 + -2.2 172,753 + -3.0 172,753 + -0.9 172,753 + +1.9 172,753 + +0.6 172,753 + -2.3 172,754 - +1.9 172,754 - +0.1 172,754 - -1.1 172,754 - +0.9 172,754 - +0.3 172,754 - -0.7 172,754 - -1.2 172,754 - +0.4 172,902 + +0.7 172,902 + -1.1 172,902 + -0.2 172,902 + -2.7 172,902 + -2.6 172,902 + +0.0 172,903 - -1.3 172,903 - +0.3 172,903 - -0.4 172,903 - +0.6 172,923 + -3.2 172,924 + +0.3 172,926 + -0.2 172,926 + +0.1 172,927 - GFF4802 0.10 -0.1 172,927 - GFF4802 0.10 +0.6 172,959 + GFF4802 0.21 +0.7 172,959 + GFF4802 0.21 -2.9 172,959 + GFF4802 0.21 +1.3 172,959 + GFF4802 0.21 -2.5 172,959 + GFF4802 0.21 -0.3 172,959 + GFF4802 0.21 +1.6 172,959 + GFF4802 0.21 -1.6 172,959 + GFF4802 0.21 -1.7 172,959 + GFF4802 0.21 -0.1 172,960 - GFF4802 0.22 -0.1 172,960 - GFF4802 0.22 -1.5 172,960 - GFF4802 0.22 +1.1 172,960 - GFF4802 0.22 -1.2 172,960 - GFF4802 0.22 +0.3 172,960 - GFF4802 0.22 +0.2 172,960 - GFF4802 0.22 +0.9 172,960 - GFF4802 0.22 -0.7 172,960 - GFF4802 0.22 +2.2 172,960 - GFF4802 0.22 +0.0 172,960 - GFF4802 0.22 -1.1 172,960 - GFF4802 0.22 +0.3 172,962 + GFF4802 0.22 +1.0 172,962 + GFF4802 0.22 +0.3 172,962 + GFF4802 0.22 +0.2 172,962 + GFF4802 0.22 -0.3 172,962 + GFF4802 0.22 +0.9 172,962 + GFF4802 0.22 -0.9 172,962 + GFF4802 0.22 -0.1 172,962 + GFF4802 0.22 -1.1 172,962 + GFF4802 0.22 +0.2 172,962 + GFF4802 0.22 +0.0 172,962 + GFF4802 0.22 -0.1 172,963 - GFF4802 0.23 +1.5 172,963 - GFF4802 0.23 -0.1 172,963 - GFF4802 0.23 -0.1 172,963 - GFF4802 0.23 -0.4 172,963 - GFF4802 0.23 -2.7 173,059 + GFF4802 0.56 -1.1 173,078 + GFF4802 0.62 -0.6 173,078 + GFF4802 0.62 +0.7 173,134 + GFF4802 0.82 +0.6 173,235 + +0.6 173,235 + -1.2 173,236 - +0.8 173,236 - -2.0 173,236 - -1.1 173,245 + -0.9 173,245 + -0.1 173,245 + +0.7 173,245 + -0.7 173,245 + +0.8 173,245 + -1.8 173,245 + -1.8 173,246 - -0.7 173,246 - -1.6 173,246 - -1.4 173,246 - -1.3 173,246 - +1.1 173,246 - -0.4 173,246 - -1.4 173,318 + +0.9 173,382 + -1.1 173,383 - -1.8 174,130 + GFF4803 0.53 -0.9 174,130 + GFF4803 0.53 -1.1 174,130 + GFF4803 0.53 -0.4 174,130 + GFF4803 0.53 +1.9 174,296 - GFF4803 0.64 -1.3 174,296 - GFF4803 0.64 -1.9 174,296 - GFF4803 0.64 +0.9 174,296 - GFF4803 0.64 -0.9 174,296 - GFF4803 0.64 -0.7 174,296 - GFF4803 0.64 -1.9 174,414 + GFF4803 0.72 -2.1 174,415 - GFF4803 0.72 -2.7 174,441 + GFF4803 0.74 -1.7 174,441 + GFF4803 0.74 +0.3 174,442 - GFF4803 0.74 -0.1 174,552 + GFF4803 0.81 -2.1 174,552 + GFF4803 0.81 -2.1 174,552 + GFF4803 0.81 -0.4 174,552 + GFF4803 0.81 -1.7 174,552 + GFF4803 0.81 -2.3 174,552 + GFF4803 0.81 -2.7 174,553 - GFF4803 0.81 -0.1 174,553 - GFF4803 0.81 +3.9 174,553 - GFF4803 0.81 -0.1 174,553 - GFF4803 0.81 -0.4 174,553 - GFF4803 0.81 -1.1 174,553 - GFF4803 0.81 -0.9 174,553 - GFF4803 0.81 +0.9 174,554 - GFF4803 0.81 -0.4 174,702 + -0.7 174,702 + +0.3 174,702 + -2.3 174,702 + -0.7 174,703 - -1.3 174,703 - -1.9 174,703 - +0.3 174,703 - +0.9 175,306 + GFF4804 0.86 +0.2 175,306 + GFF4804 0.86 -2.1 175,306 + GFF4804 0.86 +1.9 175,348 - +1.2 175,348 - +2.3 175,407 - -0.9 175,407 - -2.2 175,407 - -1.3 175,468 + -4.4 175,468 + -1.2 175,468 + +0.3 175,468 + -2.6 175,468 + -1.0 175,468 + -1.6 175,468 + -1.9 175,468 + -2.1 175,468 + -0.6 175,468 + -1.2 175,468 + -1.7 175,468 + +0.0 175,468 + -0.1 175,468 + -2.6 175,468 + +1.2 175,469 - +0.1 175,469 - +0.5 175,469 - -1.6 175,552 + GFF4805 0.13 +2.0 175,552 + GFF4805 0.13 -1.6 175,552 + GFF4805 0.13 -3.6 175,552 + GFF4805 0.13 -0.8 175,552 + GFF4805 0.13 -0.4 175,553 - GFF4805 0.13 -2.0 175,553 - GFF4805 0.13 -0.4 175,553 - GFF4805 0.13 +2.6 175,553 - GFF4805 0.13 -0.9 175,553 - GFF4805 0.13 +1.2 175,553 - GFF4805 0.13 -0.5 175,636 + GFF4805 0.21 +1.1 175,636 + GFF4805 0.21 -1.4 175,636 + GFF4805 0.21 -0.8 175,637 - GFF4805 0.22 +0.1 175,637 - GFF4805 0.22 -0.7 175,637 - GFF4805 0.22 +0.6 175,637 - GFF4805 0.22 +0.0 175,637 - GFF4805 0.22 -0.2 175,637 - GFF4805 0.22 +0.4 175,637 - GFF4805 0.22 -0.7 175,637 - GFF4805 0.22 +0.1 175,637 - GFF4805 0.22 +0.5 175,637 - GFF4805 0.22 +0.9 175,637 - GFF4805 0.22 -0.3 175,637 - GFF4805 0.22 -1.6 175,637 - GFF4805 0.22 -0.1 175,654 + GFF4805 0.23 +1.1 175,654 + GFF4805 0.23 -0.4 175,654 + GFF4805 0.23 +0.9 175,654 + GFF4805 0.23 -1.2 175,655 - GFF4805 0.23 -0.4 175,655 - GFF4805 0.23 -0.3 175,655 - GFF4805 0.23 +1.9 175,655 - GFF4805 0.23 +1.3 175,655 - GFF4805 0.23 -2.3 175,655 - GFF4805 0.23 +0.1
Or see this region's nucleotide sequence