Strain Fitness in Variovorax sp. SCN45 around GFF4657

Experiment: Community=guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=guar; Passage=4
15,161	+		GFF4656	0.68	-0.9
15,161	+		GFF4656	0.68	-1.3
15,161	+		GFF4656	0.68	+0.1
15,245	+		GFF4656	0.72	-1.6
15,245	+		GFF4656	0.72	+3.6
15,245	+		GFF4656	0.72	-1.6
15,245	+		GFF4656	0.72	+0.8
15,245	+		GFF4656	0.72	+2.9
15,245	+		GFF4656	0.72	-1.9
15,246	-		GFF4656	0.72	-1.4
15,246	-		GFF4656	0.72	-1.8
15,246	-		GFF4656	0.72	-1.8
15,458	+		GFF4656	0.80	-0.2
15,459	-		GFF4656	0.80	-0.1
15,942	+				-0.3
15,942	+				-2.3
15,943	-				-3.3
15,943	-				-1.9
16,010	+				+0.1
16,010	+				-0.8
16,011	-				-2.0
16,011	-				-2.4
16,011	-				-1.7
16,011	-				+0.0
16,011	-				+0.6
16,011	-				-1.5
16,011	-				-0.5
16,011	-				+0.7
16,053	+				+1.5
16,053	+				-1.8
16,067	+				-0.2
16,067	+				+0.2
16,067	+				-1.3
16,067	+				-1.6
16,067	+				-0.6
16,067	+				-0.1
16,067	+				-0.5
16,067	+				-0.7
16,068	-				+2.1
16,068	-				-1.9
16,068	-				-1.7
16,068	-				-0.5
16,068	-				+0.9
16,068	-				+0.9
16,068	-				-1.6
16,155	-		GFF4657	0.11	-0.1
16,155	-		GFF4657	0.11	-1.0
16,155	-		GFF4657	0.11	+0.3
16,214	+		GFF4657	0.17	-0.4
16,215	-		GFF4657	0.17	+0.3
16,581	-		GFF4657	0.54	-2.2
17,073	+				-3.0
17,073	+				-1.7
17,073	+				+1.9
17,073	+				-3.3
17,073	+				+0.5
17,073	+				-1.7
17,073	+				+0.1
17,073	+				-1.6
17,073	+				-3.0
17,073	+				-0.3
17,073	+				+1.4
17,073	+				+0.3
17,074	-				-1.9
17,074	-				-3.9
17,074	-				-1.0
17,074	-				-1.1
17,074	-				-2.8
17,074	-				-1.7
17,074	-				-1.6
17,074	-				-0.3
17,100	+		GFF4658	0.11	-0.1
17,100	+		GFF4658	0.11	-1.3
17,100	+		GFF4658	0.11	+1.0
17,101	-		GFF4658	0.11	+0.5
17,116	+		GFF4658	0.14	-0.2
17,116	+		GFF4658	0.14	+0.3
17,117	-		GFF4658	0.14	+0.4
17,117	-		GFF4658	0.14	-1.4
17,117	-		GFF4658	0.14	+0.4
17,117	-		GFF4658	0.14	+0.6
17,117	-		GFF4658	0.14	-1.4
17,256	+		GFF4658	0.41	+1.3
17,256	+		GFF4658	0.41	+0.1
17,256	+		GFF4658	0.41	-0.4
17,256	+		GFF4658	0.41	+0.2
17,257	-		GFF4658	0.41	-1.6
17,257	-		GFF4658	0.41	-0.1
17,346	+		GFF4658	0.59	-1.3
17,346	+		GFF4658	0.59	+1.0
17,346	+		GFF4658	0.59	-0.4
17,347	-		GFF4658	0.59	+0.9
17,347	-		GFF4658	0.59	+1.2
17,347	-		GFF4658	0.59	-1.7
17,347	-		GFF4658	0.59	+2.6
17,347	-		GFF4658	0.59	-1.3
17,377	-		GFF4658	0.65	+1.0
17,649	+		GFF4659	0.68	+1.9
17,649	+		GFF4659	0.68	-2.6
17,649	+		GFF4659	0.68	-2.0
17,649	+		GFF4659	0.68	-0.8
17,649	+		GFF4659	0.68	-0.8
17,650	-		GFF4659	0.69	-0.6
17,650	-		GFF4659	0.69	-1.9
17,650	-		GFF4659	0.69	-0.8
17,650	-		GFF4659	0.69	-2.6
17,712	+				-1.9
17,713	-				+1.2
17,900	+		GFF4660	0.23	+0.4
17,900	+		GFF4660	0.23	-1.3
17,900	+		GFF4660	0.23	+0.8
17,901	-		GFF4660	0.23	-0.4
17,901	-		GFF4660	0.23	-0.3
17,901	-		GFF4660	0.23	+0.1
17,961	+		GFF4660	0.30	-0.6
17,961	+		GFF4660	0.30	+0.7
17,961	+		GFF4660	0.30	-0.1
17,961	+		GFF4660	0.30	-2.0
17,961	+		GFF4660	0.30	+0.9
17,961	+		GFF4660	0.30	+1.9
17,961	+		GFF4660	0.30	+1.6
17,961	+		GFF4660	0.30	-1.1
17,962	-		GFF4660	0.30	-2.0
17,962	-		GFF4660	0.30	-0.7
17,962	-		GFF4660	0.30	-3.8
17,962	-		GFF4660	0.30	-0.2
17,962	-		GFF4660	0.30	-0.4
17,962	-		GFF4660	0.30	-0.8
17,962	-		GFF4660	0.30	+0.4
18,002	+		GFF4660	0.34	+0.2
18,002	+		GFF4660	0.34	-0.2
18,002	+		GFF4660	0.34	-1.6
18,003	-		GFF4660	0.34	-0.1
18,003	-		GFF4660	0.34	-1.8
18,003	-		GFF4660	0.34	-0.1
18,003	-		GFF4660	0.34	-0.8
18,003	-		GFF4660	0.34	-2.0
18,003	-		GFF4660	0.34	+1.0