Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4584 and GFF4585 are separated by 30 nucleotides GFF4585 and GFF4586 are separated by 80 nucleotides GFF4586 and GFF4587 are separated by 19 nucleotides
GFF4584 - TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein, at 225,488 to 226,525
GFF4584
GFF4585 - hypothetical protein, at 226,556 to 227,521
GFF4585
GFF4586 - no description, at 227,602 to 228,063
GFF4586
GFF4587 - Dienelactone hydrolase family protein, at 228,083 to 228,910
GFF4587
Position (kb) 226
227
228 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 225.587 kb on + strand at 225.587 kb on + strand at 225.588 kb on - strand at 225.588 kb on - strand at 225.849 kb on - strand, within GFF4584 at 226.205 kb on + strand, within GFF4584 at 226.206 kb on - strand, within GFF4584 at 226.448 kb on + strand at 226.523 kb on + strand at 227.100 kb on + strand, within GFF4585 at 227.100 kb on + strand, within GFF4585 at 227.101 kb on - strand, within GFF4585 at 227.325 kb on - strand, within GFF4585 at 227.595 kb on + strand at 227.595 kb on + strand at 227.803 kb on + strand, within GFF4586 at 227.803 kb on + strand, within GFF4586 at 227.804 kb on - strand, within GFF4586 at 227.869 kb on + strand, within GFF4586 at 227.990 kb on + strand, within GFF4586 at 227.990 kb on + strand, within GFF4586 at 227.991 kb on - strand, within GFF4586 at 228.025 kb on + strand at 228.176 kb on + strand, within GFF4587 at 228.176 kb on + strand, within GFF4587 at 228.176 kb on + strand, within GFF4587 at 228.177 kb on - strand, within GFF4587 at 228.177 kb on - strand, within GFF4587 at 228.284 kb on + strand, within GFF4587 at 228.285 kb on - strand, within GFF4587 at 228.285 kb on - strand, within GFF4587
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 225,587 + +0.2 225,587 + +0.7 225,588 - -2.9 225,588 - +1.3 225,849 - GFF4584 0.35 -0.9 226,205 + GFF4584 0.69 -1.4 226,206 - GFF4584 0.69 -2.4 226,448 + -0.2 226,523 + +0.9 227,100 + GFF4585 0.56 -0.6 227,100 + GFF4585 0.56 +0.4 227,101 - GFF4585 0.56 -1.2 227,325 - GFF4585 0.80 -1.6 227,595 + -0.2 227,595 + -0.6 227,803 + GFF4586 0.44 -0.0 227,803 + GFF4586 0.44 +0.3 227,804 - GFF4586 0.44 -1.7 227,869 + GFF4586 0.58 +0.1 227,990 + GFF4586 0.84 -0.0 227,990 + GFF4586 0.84 +0.7 227,991 - GFF4586 0.84 +2.9 228,025 + -1.2 228,176 + GFF4587 0.11 -0.4 228,176 + GFF4587 0.11 +0.1 228,176 + GFF4587 0.11 +0.3 228,177 - GFF4587 0.11 -3.2 228,177 - GFF4587 0.11 -1.8 228,284 + GFF4587 0.24 +0.1 228,285 - GFF4587 0.24 -0.4 228,285 - GFF4587 0.24 -3.7
Or see this region's nucleotide sequence