Strain Fitness in Variovorax sp. SCN45 around GFF4528

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4525 and GFF4527 are separated by 33 nucleotidesGFF4527 and GFF4528 are separated by 67 nucleotidesGFF4528 and GFF4529 are separated by 49 nucleotides GFF4525 - no description, at 165,118 to 165,261 GFF4525 GFF4527 - Transcriptional regulator, GntR family, at 165,295 to 166,077 GFF4527 GFF4528 - Permease of the drug/metabolite transporter (DMT) superfamily, at 166,145 to 167,098 GFF4528 GFF4529 - Probable signal peptide protein, at 167,148 to 167,978 GFF4529 Position (kb) 166 167 168Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 165.220 kb on - strand, within GFF4525at 165.282 kb on - strandat 165.282 kb on - strandat 165.282 kb on - strandat 165.294 kb on + strandat 165.294 kb on + strandat 165.294 kb on + strandat 165.295 kb on - strandat 165.295 kb on - strandat 165.385 kb on + strand, within GFF4527at 165.385 kb on + strand, within GFF4527at 165.386 kb on - strand, within GFF4527at 165.592 kb on + strand, within GFF4527at 165.593 kb on - strand, within GFF4527at 165.796 kb on + strand, within GFF4527at 165.796 kb on + strand, within GFF4527at 165.796 kb on + strand, within GFF4527at 165.796 kb on + strand, within GFF4527at 165.797 kb on - strand, within GFF4527at 165.797 kb on - strand, within GFF4527at 165.797 kb on - strand, within GFF4527at 165.797 kb on - strand, within GFF4527at 165.797 kb on - strand, within GFF4527at 165.797 kb on - strand, within GFF4527at 165.797 kb on - strand, within GFF4527at 165.829 kb on + strand, within GFF4527at 165.829 kb on + strand, within GFF4527at 165.830 kb on - strand, within GFF4527at 165.830 kb on - strand, within GFF4527at 165.830 kb on - strand, within GFF4527at 165.830 kb on - strand, within GFF4527at 165.830 kb on - strand, within GFF4527at 165.830 kb on - strand, within GFF4527at 165.841 kb on + strand, within GFF4527at 166.247 kb on + strand, within GFF4528at 166.247 kb on + strand, within GFF4528at 166.248 kb on - strand, within GFF4528at 166.248 kb on - strand, within GFF4528at 166.248 kb on - strand, within GFF4528at 166.676 kb on + strand, within GFF4528at 166.677 kb on - strand, within GFF4528at 166.677 kb on - strand, within GFF4528at 166.880 kb on + strand, within GFF4528at 166.880 kb on + strand, within GFF4528at 166.881 kb on - strand, within GFF4528at 166.881 kb on - strand, within GFF4528at 166.881 kb on - strand, within GFF4528at 166.881 kb on - strand, within GFF4528at 166.931 kb on + strand, within GFF4528at 166.932 kb on - strand, within GFF4528at 167.096 kb on + strandat 167.096 kb on + strandat 167.096 kb on + strandat 167.097 kb on - strandat 167.097 kb on - strandat 167.097 kb on - strandat 167.097 kb on - strandat 167.110 kb on + strandat 167.110 kb on + strandat 167.110 kb on + strandat 167.110 kb on + strandat 167.110 kb on + strandat 167.111 kb on - strandat 167.111 kb on - strandat 167.129 kb on + strandat 167.129 kb on + strandat 167.129 kb on + strandat 167.129 kb on + strandat 167.129 kb on + strandat 167.129 kb on + strandat 167.129 kb on + strandat 167.129 kb on + strandat 167.130 kb on - strandat 167.130 kb on - strandat 167.130 kb on - strandat 167.130 kb on - strandat 167.130 kb on - strandat 167.130 kb on - strandat 167.130 kb on - strandat 167.259 kb on + strand, within GFF4529at 167.259 kb on + strand, within GFF4529at 167.260 kb on - strand, within GFF4529at 167.260 kb on - strand, within GFF4529at 167.260 kb on - strand, within GFF4529at 167.260 kb on - strand, within GFF4529at 167.336 kb on - strand, within GFF4529at 167.336 kb on - strand, within GFF4529at 167.336 kb on - strand, within GFF4529at 167.336 kb on - strand, within GFF4529at 167.336 kb on - strand, within GFF4529at 167.353 kb on - strand, within GFF4529at 167.376 kb on + strand, within GFF4529at 167.377 kb on - strand, within GFF4529at 167.377 kb on - strand, within GFF4529at 167.377 kb on - strand, within GFF4529at 167.377 kb on - strand, within GFF4529at 167.377 kb on - strand, within GFF4529at 167.377 kb on - strand, within GFF4529at 167.377 kb on - strand, within GFF4529at 167.377 kb on - strand, within GFF4529at 167.439 kb on + strand, within GFF4529at 167.439 kb on + strand, within GFF4529at 167.439 kb on + strand, within GFF4529at 167.439 kb on + strand, within GFF4529at 167.439 kb on + strand, within GFF4529at 167.440 kb on - strand, within GFF4529at 167.440 kb on - strand, within GFF4529at 167.440 kb on - strand, within GFF4529at 167.496 kb on + strand, within GFF4529at 167.496 kb on + strand, within GFF4529at 167.496 kb on + strand, within GFF4529at 167.496 kb on + strand, within GFF4529at 167.496 kb on + strand, within GFF4529at 167.496 kb on + strand, within GFF4529at 167.496 kb on + strand, within GFF4529at 167.496 kb on + strand, within GFF4529at 167.496 kb on + strand, within GFF4529at 167.496 kb on + strand, within GFF4529at 167.496 kb on + strand, within GFF4529at 167.496 kb on + strand, within GFF4529at 167.496 kb on + strand, within GFF4529at 167.496 kb on + strand, within GFF4529at 167.496 kb on + strand, within GFF4529at 167.497 kb on - strand, within GFF4529at 167.497 kb on - strand, within GFF4529at 167.497 kb on - strand, within GFF4529at 167.497 kb on - strand, within GFF4529at 167.497 kb on - strand, within GFF4529at 167.497 kb on - strand, within GFF4529at 167.497 kb on - strand, within GFF4529at 167.497 kb on - strand, within GFF4529at 167.497 kb on - strand, within GFF4529at 167.497 kb on - strand, within GFF4529at 167.497 kb on - strand, within GFF4529at 167.497 kb on - strand, within GFF4529at 167.497 kb on - strand, within GFF4529at 167.497 kb on - strand, within GFF4529at 167.502 kb on + strand, within GFF4529at 167.502 kb on + strand, within GFF4529at 167.503 kb on - strand, within GFF4529at 167.503 kb on - strand, within GFF4529at 167.503 kb on - strand, within GFF4529at 167.526 kb on - strand, within GFF4529at 167.526 kb on - strand, within GFF4529at 167.538 kb on + strand, within GFF4529at 167.553 kb on + strand, within GFF4529at 167.589 kb on + strand, within GFF4529at 167.613 kb on + strand, within GFF4529at 167.614 kb on - strand, within GFF4529at 167.614 kb on - strand, within GFF4529at 167.614 kb on - strand, within GFF4529at 167.685 kb on + strand, within GFF4529at 167.686 kb on - strand, within GFF4529at 167.686 kb on - strand, within GFF4529at 167.686 kb on - strand, within GFF4529at 167.686 kb on - strand, within GFF4529at 167.734 kb on - strand, within GFF4529at 167.734 kb on - strand, within GFF4529at 167.769 kb on + strand, within GFF4529at 167.770 kb on - strand, within GFF4529at 167.788 kb on - strand, within GFF4529at 167.805 kb on + strand, within GFF4529at 167.805 kb on + strand, within GFF4529at 167.806 kb on - strand, within GFF4529at 167.806 kb on - strand, within GFF4529at 167.806 kb on - strand, within GFF4529at 167.868 kb on + strand, within GFF4529at 167.868 kb on + strand, within GFF4529at 167.868 kb on + strand, within GFF4529at 167.869 kb on - strand, within GFF4529at 167.869 kb on - strand, within GFF4529at 167.869 kb on - strand, within GFF4529at 167.928 kb on + strandat 167.928 kb on + strandat 167.928 kb on + strandat 167.929 kb on - strandat 167.929 kb on - strandat 167.929 kb on - strandat 167.929 kb on - strandat 167.929 kb on - strandat 167.951 kb on + strandat 167.976 kb on + strandat 167.976 kb on + strandat 167.977 kb on - strandat 167.977 kb on - strandat 167.977 kb on - strandat 168.038 kb on + strandat 168.038 kb on + strandat 168.039 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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165,220 - GFF4525 0.71 -0.5
165,282 - -0.3
165,282 - +1.0
165,282 - -1.7
165,294 + -0.1
165,294 + +1.0
165,294 + -1.5
165,295 - +1.0
165,295 - +0.7
165,385 + GFF4527 0.11 -0.8
165,385 + GFF4527 0.11 +2.3
165,386 - GFF4527 0.12 -2.4
165,592 + GFF4527 0.38 -0.3
165,593 - GFF4527 0.38 +0.1
165,796 + GFF4527 0.64 +0.7
165,796 + GFF4527 0.64 -1.8
165,796 + GFF4527 0.64 -3.3
165,796 + GFF4527 0.64 +1.5
165,797 - GFF4527 0.64 +1.9
165,797 - GFF4527 0.64 +0.8
165,797 - GFF4527 0.64 -2.1
165,797 - GFF4527 0.64 +1.1
165,797 - GFF4527 0.64 -2.4
165,797 - GFF4527 0.64 -1.4
165,797 - GFF4527 0.64 +0.1
165,829 + GFF4527 0.68 -2.2
165,829 + GFF4527 0.68 -0.2
165,830 - GFF4527 0.68 +2.1
165,830 - GFF4527 0.68 -3.0
165,830 - GFF4527 0.68 +2.2
165,830 - GFF4527 0.68 -1.8
165,830 - GFF4527 0.68 -2.3
165,830 - GFF4527 0.68 +1.3
165,841 + GFF4527 0.70 +0.7
166,247 + GFF4528 0.11 -0.2
166,247 + GFF4528 0.11 -1.0
166,248 - GFF4528 0.11 -1.7
166,248 - GFF4528 0.11 +1.5
166,248 - GFF4528 0.11 +0.7
166,676 + GFF4528 0.56 -1.7
166,677 - GFF4528 0.56 -0.4
166,677 - GFF4528 0.56 +1.0
166,880 + GFF4528 0.77 +1.0
166,880 + GFF4528 0.77 -1.1
166,881 - GFF4528 0.77 -2.2
166,881 - GFF4528 0.77 -2.8
166,881 - GFF4528 0.77 -1.1
166,881 - GFF4528 0.77 +3.4
166,931 + GFF4528 0.82 -0.7
166,932 - GFF4528 0.82 +2.7
167,096 + -1.8
167,096 + -1.0
167,096 + +1.4
167,097 - -1.3
167,097 - +0.3
167,097 - +1.4
167,097 - +1.7
167,110 + +0.3
167,110 + +2.4
167,110 + -0.3
167,110 + -1.1
167,110 + -0.8
167,111 - +1.3
167,111 - +1.3
167,129 + +2.8
167,129 + -1.4
167,129 + -1.6
167,129 + +1.1
167,129 + +0.5
167,129 + +3.1
167,129 + -0.8
167,129 + +1.1
167,130 - +0.3
167,130 - +1.1
167,130 - -1.6
167,130 - -0.0
167,130 - -1.5
167,130 - +0.3
167,130 - +1.7
167,259 + GFF4529 0.13 +0.6
167,259 + GFF4529 0.13 -1.1
167,260 - GFF4529 0.13 -2.3
167,260 - GFF4529 0.13 -1.6
167,260 - GFF4529 0.13 +2.3
167,260 - GFF4529 0.13 +2.3
167,336 - GFF4529 0.23 +0.7
167,336 - GFF4529 0.23 +1.7
167,336 - GFF4529 0.23 -0.5
167,336 - GFF4529 0.23 -0.2
167,336 - GFF4529 0.23 +0.1
167,353 - GFF4529 0.25 -0.7
167,376 + GFF4529 0.27 +0.7
167,377 - GFF4529 0.28 -1.3
167,377 - GFF4529 0.28 +1.5
167,377 - GFF4529 0.28 +0.3
167,377 - GFF4529 0.28 -2.1
167,377 - GFF4529 0.28 -0.5
167,377 - GFF4529 0.28 -2.1
167,377 - GFF4529 0.28 -1.0
167,377 - GFF4529 0.28 +0.2
167,439 + GFF4529 0.35 -0.0
167,439 + GFF4529 0.35 +0.7
167,439 + GFF4529 0.35 -0.4
167,439 + GFF4529 0.35 +0.1
167,439 + GFF4529 0.35 +0.2
167,440 - GFF4529 0.35 +0.8
167,440 - GFF4529 0.35 -2.9
167,440 - GFF4529 0.35 +0.5
167,496 + GFF4529 0.42 -1.3
167,496 + GFF4529 0.42 -0.5
167,496 + GFF4529 0.42 -1.7
167,496 + GFF4529 0.42 -0.4
167,496 + GFF4529 0.42 +0.4
167,496 + GFF4529 0.42 -0.5
167,496 + GFF4529 0.42 +2.3
167,496 + GFF4529 0.42 +0.3
167,496 + GFF4529 0.42 -0.9
167,496 + GFF4529 0.42 -1.4
167,496 + GFF4529 0.42 -0.9
167,496 + GFF4529 0.42 -0.3
167,496 + GFF4529 0.42 -0.2
167,496 + GFF4529 0.42 +2.8
167,496 + GFF4529 0.42 -1.4
167,497 - GFF4529 0.42 +0.7
167,497 - GFF4529 0.42 -0.7
167,497 - GFF4529 0.42 -0.2
167,497 - GFF4529 0.42 -1.0
167,497 - GFF4529 0.42 +0.6
167,497 - GFF4529 0.42 +0.7
167,497 - GFF4529 0.42 +0.3
167,497 - GFF4529 0.42 -1.8
167,497 - GFF4529 0.42 +0.0
167,497 - GFF4529 0.42 -0.8
167,497 - GFF4529 0.42 -0.1
167,497 - GFF4529 0.42 -1.2
167,497 - GFF4529 0.42 -0.8
167,497 - GFF4529 0.42 -1.4
167,502 + GFF4529 0.43 -1.0
167,502 + GFF4529 0.43 +0.3
167,503 - GFF4529 0.43 -0.0
167,503 - GFF4529 0.43 -0.8
167,503 - GFF4529 0.43 -0.1
167,526 - GFF4529 0.45 +1.2
167,526 - GFF4529 0.45 -0.1
167,538 + GFF4529 0.47 -1.5
167,553 + GFF4529 0.49 -2.5
167,589 + GFF4529 0.53 +1.7
167,613 + GFF4529 0.56 +0.6
167,614 - GFF4529 0.56 -2.6
167,614 - GFF4529 0.56 -0.9
167,614 - GFF4529 0.56 +2.2
167,685 + GFF4529 0.65 +0.4
167,686 - GFF4529 0.65 +0.5
167,686 - GFF4529 0.65 +2.8
167,686 - GFF4529 0.65 +0.0
167,686 - GFF4529 0.65 -1.3
167,734 - GFF4529 0.71 -1.6
167,734 - GFF4529 0.71 -0.2
167,769 + GFF4529 0.75 -0.7
167,770 - GFF4529 0.75 -0.0
167,788 - GFF4529 0.77 +0.7
167,805 + GFF4529 0.79 -2.0
167,805 + GFF4529 0.79 -0.9
167,806 - GFF4529 0.79 +2.9
167,806 - GFF4529 0.79 +0.1
167,806 - GFF4529 0.79 -1.4
167,868 + GFF4529 0.87 -0.6
167,868 + GFF4529 0.87 -0.1
167,868 + GFF4529 0.87 -0.6
167,869 - GFF4529 0.87 +0.4
167,869 - GFF4529 0.87 -1.7
167,869 - GFF4529 0.87 +0.5
167,928 + -0.0
167,928 + -1.5
167,928 + +2.1
167,929 - +0.3
167,929 - -0.8
167,929 - -0.0
167,929 - -0.0
167,929 - +1.1
167,951 + +1.0
167,976 + -3.3
167,976 + -0.3
167,977 - -1.7
167,977 - +0.3
167,977 - +0.2
168,038 + +0.3
168,038 + +0.4
168,039 - +1.7

Or see this region's nucleotide sequence