Strain Fitness in Variovorax sp. SCN45 around GFF4292

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4291 and GFF4292 are separated by 6 nucleotidesGFF4292 and GFF4293 overlap by 4 nucleotides GFF4291 - Putative oxidoreductase YncB, at 211,164 to 212,189 GFF4291 GFF4292 - no description, at 212,196 to 212,675 GFF4292 GFF4293 - 4-hydroxybutyrate coenzyme A transferase, at 212,672 to 213,916 GFF4293 Position (kb) 212 213Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 211.305 kb on + strand, within GFF4291at 211.305 kb on + strand, within GFF4291at 211.306 kb on - strand, within GFF4291at 211.306 kb on - strand, within GFF4291at 211.834 kb on - strand, within GFF4291at 211.837 kb on - strand, within GFF4291at 212.458 kb on + strand, within GFF4292

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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211,305 + GFF4291 0.14 +0.6
211,305 + GFF4291 0.14 -1.4
211,306 - GFF4291 0.14 +1.2
211,306 - GFF4291 0.14 -2.4
211,834 - GFF4291 0.65 -0.2
211,837 - GFF4291 0.66 -0.5
212,458 + GFF4292 0.55 -5.1

Or see this region's nucleotide sequence